| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcolC_0927 |
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| Symbol | rumA |
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| ID | 6068545 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli ATCC 8739 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010468 |
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| Strand | + |
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| Start bp | 1005706 |
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| End bp | 1007007 |
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| Gene Length | 1302 bp |
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| Protein Length | 433 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 641600335 |
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| Product | 23S rRNA 5-methyluridine methyltransferase |
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| Protein accession | YP_001723923 |
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| Protein GI | 170018969 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase |
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| TIGRFAM ID | [TIGR00479] 23S rRNA (uracil-5-)-methyltransferase RumA |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.000132702 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGCAAT TCTACTCTGC AAAACGACGC ACGACGACGC GTCAGATCAT AACCGTTTCA
GTCAACGACC TCGACTCTTT TGGTCAGGGC GTGGCGCGAC ATAACGGCAA AGCGTTATTT
ATTCCTGGAT TACTGCCACA GGAAAACGCG GAAGTTACTG TTACTGAAGA TAAAAAACAG
TACGCCCGCG CTAAAGTCGT GCGCCGGTTA AGCGATAGCC CGGAACGCGA AACGCCACGC
TGCCCTCATT TTGGCGTATG CGGTGGCTGT CAGCAACAAC ACGCCAGCGT GGATTTACAG
CAGCGAAGCA AAAGTGCGGC ACTCGCCCGA TTAATGAAAC ACGAAGTCTC TGAAGTGATC
GCCGATGTTC CCTGGGGCTA TCGCCGTCGC GCGCGTTTAA GTTTGAACTA CTTACCGAAA
ACACAGCAAC TTCAGATGGG CTTTCGCAAA GCGGGCTCCA GTGACATTGT CGACGTTAAA
CAATGCCCCA TTTTAGTGCC CCAACTTGAA GCATTGCTGC CCAAAGTCAG GGCATGCCTG
GGCAGCTTAC AAGCTATACG CCATCTTGGT CATGTTGAAC TGGTACAGGC AACCAGCGGC
ACGCTGATGA TTTTGCGCCA TACCGCACCG CTAAGTTCGG CAGATCGCGA AAAACTGGAA
CGCTTTTCGC ATTCTGAAGG CCTGGATCTG TATCTCGCCC CCGATAGTGA GATACTCGAA
ACCGTCTCTG GTGAGATGCC CTGGTATGAC TCAAACGGGT TGCGCTTAAC TTTTAGCCCG
CGCGATTTTA TTCAGGTCAA TGCGGGTGTG AACCAAAAAA TGGTAGCGCG TGCGTTGGAA
TGGCTGGATG TGCAACCAGA AGATCGCGTA CTGGATCTGT TCTGCGGTAT GGGCAACTTT
ACACTGCCAT TGGCGACACA AGCTGCCAGT GTGGTGGGTG TAGAAGGTGT TCCGGCGCTG
GTGGAAAAAG GCCAGCAGAA TGCGCGTCTT AATGGCTTAC AGAATGTGAC GTTTTATCAT
GAAAATCTTG AAGAAGATGT CACAAAGCAG CCGTGGGCGA AAAACGGCTT CGATAAAGTG
TTGCTGGACC CGGCGCGAGC AGGTGCCGCA GGTGTTATGC AGCAAATTAT AAAACTGGAA
CCTATTCGTA TAGTTTATGT ATCCTGTAAT CCTGCAACGC TGGCTCGGGA TAGCGAAGCG
TTATTAAAAG CAGGATATAC CATTGCGCGA CTGGCGATGC TGGATATGTT CCCACACACG
GGACATCTGG AATCGATGGT ACTTTTCTCG CGCGTTAAAT AG
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| Protein sequence | MAQFYSAKRR TTTRQIITVS VNDLDSFGQG VARHNGKALF IPGLLPQENA EVTVTEDKKQ
YARAKVVRRL SDSPERETPR CPHFGVCGGC QQQHASVDLQ QRSKSAALAR LMKHEVSEVI
ADVPWGYRRR ARLSLNYLPK TQQLQMGFRK AGSSDIVDVK QCPILVPQLE ALLPKVRACL
GSLQAIRHLG HVELVQATSG TLMILRHTAP LSSADREKLE RFSHSEGLDL YLAPDSEILE
TVSGEMPWYD SNGLRLTFSP RDFIQVNAGV NQKMVARALE WLDVQPEDRV LDLFCGMGNF
TLPLATQAAS VVGVEGVPAL VEKGQQNARL NGLQNVTFYH ENLEEDVTKQ PWAKNGFDKV
LLDPARAGAA GVMQQIIKLE PIRIVYVSCN PATLARDSEA LLKAGYTIAR LAMLDMFPHT
GHLESMVLFS RVK
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