| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcolC_0551 |
|---|
| Symbol | |
|---|
| ID | 6064908 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli ATCC 8739 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010468 |
|---|
| Strand | - |
|---|
| Start bp | 592924 |
|---|
| End bp | 594960 |
|---|
| Gene Length | 2037 bp |
|---|
| Protein Length | 678 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 641599958 |
|---|
| Product | LppC family lipoprotein |
|---|
| Protein accession | YP_001723555 |
|---|
| Protein GI | 170018601 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG3107] Putative lipoprotein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.551185 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTACCCT CAACATTTTC TCGTTTGAAA GCCGCGCGTT GTCTGCCTGT TGTTCTGGCA
GCCCTGATTT TCGCCGGTTG TGGCACCCAT ACTCCCGATC AGTCCACTGC TTATATGCAG
GGCACGGCGC AGGCTGATTC TGCCTTTTAT CTTCAGCAGA TGCAGCAAAG CTCTGATGAT
ACCAGGATCA ACTGGCAATT ACTCGCCATT CGTGCACTGG TGAAAGAAGG TAAAACCGGG
CAGGCGGTTG AGTTGTTTAA CCAACTACCG CAAGAACTGA ACGATGCTCA GCGTCGCGAG
AAAACACTGC TGGCGGTAGA GATTAAACTG GCGCAGAAAG ATTTTGCTGG CGCGCAAAAC
TTGCTGGCGA AAATCACACC TGCCGATTTA GAACAAAACC AGCAAGCGCG TTACTGGCAG
GCAAAAATCG ATGCCAGCCA GGGGCGTCCT TCCATTGATT TACTGCGCGC GTTAATTGCT
CAGGAACCGC TGCTTGGCGC GAAAGAAAAA CAGCAGAATA TTGATGCCAC CTGGCAGGCG
CTCTCCTCCA TGACTCAGGA ACAGGCGAAT ACGCTGGTGA TCAACGCCGA CGAAAATATT
CTGCAAGGCT GGCTGGATCT GCAGCGCGTC TGGTTTGATA ACCGTAACGA TCCCGACATG
ATGAAAGCCG GGATCGCCGA CTGGCAGAAA CGTTATCCGA ACAATCCGGG CGCGAAAATG
CTGCCAACGC AGTTGGTTAA CGTAAAAGCG TTTAAACCAG CCTCGACCAA CAAAATCGCC
CTGCTGTTGC CACTGAATGG CCAGGCAGCG GTATTTGGTC GCACTATTCA GCAAGGCTTT
GAAGCGGCGA AAAATATCGG CACTCAGCCA GTGGCAGCTC AGGTAGCTGC CGCACCTGCC
GCAGACGTAG CAGAACAACC TCAACCGCAA ACCGTGGATG GCGTTGCCAG CCCGGCACAA
GCCTCGGTTA GCGATCTGAC CGGTGAACAG CCTGCAGCCC AGCCGGTGCC TGTAAGCGCC
CCGGCGACAA GCACCGCAGC GGTAAGCGCA CCCGCAAATC CATCCGCAGA GCTGAAAATC
TACGATACCT CATCACAACC ACTTAGCCAG ATCTTAAGCC AGGTTCAGCA GGATGGCGCG
AGTATTGTGG TCGGTCCGTT GCTGAAAAAT AACGTTGAAG AGTTGCTGAA GAGCAACACT
CCGCTGAACG TACTGGCACT GAACCAGTCG GAGAATATCG AAAATCGCGT CAATATTTGT
TACTTCGCGC TTTCACCGGA AGACGAAGCG CGCGATGCAG CGCGTCATAT TCGTGACCAG
GGTAAACAAG CGCCGCTGGT GCTGATCCCA CGCAGTTCAT TGGGCGATCG CGTAGCCAAT
GCGTTTGCGC AAGAGTGGCA GAAACTGGGC GGCGGCACCG TTCTGCAACA AAAATTTGGT
TCCACCAGCG AATTACGCGC GGGTGTTAAC GGCGGTTCTG GTATTGCTTT AACGGGTAGC
CCGATTACTC TCAGAGCGAC AACCGACTCC GGCATGACGA CCAACAATCC AACGCTGCAA
ACCACGCCAA CCGATGACCA GTTCACCAAT AATGGCGGTC GTGTCGATGC GGTGTACATT
GTGGCAACGC CGGGTGAAAT CGCTTTTATC AAACCGATGA TCGCCATGCG TAACGGTAGC
CAGAGCGGTG CAACGCTGTA CGCCAGCTCC CGCAGTGCGC AAGGGACCGC TGGCCCGGAT
TTCCGACTGG AGATGGAAGG CTTGCAGTAC AGCGAAATCC CGATGCTGGC AGGCGGTAAT
CTACCGTTAA TGCAGCAGGC ACTCAGCGCG GTGAATAACG ATTATTCACT GGCTCGCATG
TATGCGATGG GCGTCGATGC CTGGTCGCTG GCAAATCATT TCTCACAAAT GCGCCAGGTT
CAGGGTTTTG AAATCAACGG TAATACCGGA AGCCTGACGG CTAACCCGGA TTGCGTGATT
AACAGGAAGT TATCATGGCT ACAGTACCAA CAAGGTCAGG TAGTCCCCGT CAGTTAA
|
|---|
| Protein sequence | MVPSTFSRLK AARCLPVVLA ALIFAGCGTH TPDQSTAYMQ GTAQADSAFY LQQMQQSSDD
TRINWQLLAI RALVKEGKTG QAVELFNQLP QELNDAQRRE KTLLAVEIKL AQKDFAGAQN
LLAKITPADL EQNQQARYWQ AKIDASQGRP SIDLLRALIA QEPLLGAKEK QQNIDATWQA
LSSMTQEQAN TLVINADENI LQGWLDLQRV WFDNRNDPDM MKAGIADWQK RYPNNPGAKM
LPTQLVNVKA FKPASTNKIA LLLPLNGQAA VFGRTIQQGF EAAKNIGTQP VAAQVAAAPA
ADVAEQPQPQ TVDGVASPAQ ASVSDLTGEQ PAAQPVPVSA PATSTAAVSA PANPSAELKI
YDTSSQPLSQ ILSQVQQDGA SIVVGPLLKN NVEELLKSNT PLNVLALNQS ENIENRVNIC
YFALSPEDEA RDAARHIRDQ GKQAPLVLIP RSSLGDRVAN AFAQEWQKLG GGTVLQQKFG
STSELRAGVN GGSGIALTGS PITLRATTDS GMTTNNPTLQ TTPTDDQFTN NGGRVDAVYI
VATPGEIAFI KPMIAMRNGS QSGATLYASS RSAQGTAGPD FRLEMEGLQY SEIPMLAGGN
LPLMQQALSA VNNDYSLARM YAMGVDAWSL ANHFSQMRQV QGFEINGNTG SLTANPDCVI
NRKLSWLQYQ QGQVVPVS
|
|---|
| |