| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcolC_0322 |
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| Symbol | hofQ |
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| ID | 6065266 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli ATCC 8739 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010468 |
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| Strand | + |
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| Start bp | 374304 |
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| End bp | 375464 |
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| Gene Length | 1161 bp |
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| Protein Length | 386 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 641599721 |
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| Product | outer membrane porin HofQ |
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| Protein accession | YP_001723327 |
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| Protein GI | 170018373 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4796] Type II secretory pathway, component HofQ |
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| TIGRFAM ID | [TIGR02515] type IV pilus secretin (or competence protein) PilQ |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.000700239 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.175294 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTGGATG ACGTTCCGGT AGCTCAGGTG TTGCAGGCGC TGGCTGAACA GGAGAAGTTG
AACCTGGTCG TGTCGCCAGA CGTCAGCGGT ACGGTGTCGT TACATCTAAC AGATGTTCCC
TGGAAGCAGG CACTACAAAC TGTAGTGAAA AGCGCCGGAC TGATAACGCG CCAGGAGGGC
AACATTCTCT CAGTGCATTC CATTGCCTGG CAGAATAACA ATATCGCCCG CCAGGAGGCG
GAGCAGGCGC GGGCGCAGGC AAATCTGCCG CTGGAAAATC GCAGTATAAC CCTGCAATAC
GCCGACGCGG GAGAACTGGC GAAAGCGGGG GAGAAGCTAC TGAGTGCCAA AGGGAGTATG
ACCGTCGATA AACGCACCAA TCGCCTTTTG CTACGAGATA ACAAAACGGC GTTAAGCGCA
CTTGAACAGT GGGTAGCGCA AATGGATCTG CCGGTCGGGC AGGTTGAGCT GTCGGCGCAT
ATTGTCACCA TTAATGAAAA AAGTTTGCGT GAGTTAGGCG TGAAATGGAC GCTGGCCGAT
GCGCAACACG CTGGTGGCGT TGGGCAAGTC ACCACGCTTG GTAGCGACCT CTCCGTAGCG
ACGGCGACAA CGCATGTCGG TTTTAACATT GGGCGCATCA ACGGACGTTT GCTGGATCTT
GAGCTTTCTG CGCTCGAACA AAAACAGCAG CTGGATATTA TCGCTAGTCC GCGTCTGCTG
GCCTCACATC TTCAGCCTGC CAGCATTAAA CAGGGGAGCG AAATTCCATA TCAGGTTTCC
AGCGGGGAAA GTGGCGCGAC GTCGGTGGAA TTTAAAGAGG CCGTCCTGGG GATGGAGGTC
ACGCCCACGG TGTTACAAAA AGGTCGCATC CGGCTGAAAT TACACATCAG CCAGAACGTT
CCGGGGCAGG TGCTACAGCA GGCTGATGGC GAAGTGCTGG CGATTGATAA GCAGGAGATC
GAAACGCAGG TCGAGGTCAA AAGCGGAGAA ACGTTGGCGC TGGGCGGCAT TTTTACCCGT
AAAAATAAAT CGGGTCAGGA TAGCGTACCG TTGCTTGGCG ACATTCCCTT GTTCGGGCAA
TTATTTCGTC ATGACGGAAA AGAAGATGAA CGACGCGAGT TAGTGGTGTT TATCACGCCA
CGACTGGTTT CCAGTGAGTA A
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| Protein sequence | MVDDVPVAQV LQALAEQEKL NLVVSPDVSG TVSLHLTDVP WKQALQTVVK SAGLITRQEG
NILSVHSIAW QNNNIARQEA EQARAQANLP LENRSITLQY ADAGELAKAG EKLLSAKGSM
TVDKRTNRLL LRDNKTALSA LEQWVAQMDL PVGQVELSAH IVTINEKSLR ELGVKWTLAD
AQHAGGVGQV TTLGSDLSVA TATTHVGFNI GRINGRLLDL ELSALEQKQQ LDIIASPRLL
ASHLQPASIK QGSEIPYQVS SGESGATSVE FKEAVLGMEV TPTVLQKGRI RLKLHISQNV
PGQVLQQADG EVLAIDKQEI ETQVEVKSGE TLALGGIFTR KNKSGQDSVP LLGDIPLFGQ
LFRHDGKEDE RRELVVFITP RLVSSE
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