| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcolC_0204 |
|---|
| Symbol | |
|---|
| ID | 6064464 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli ATCC 8739 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010468 |
|---|
| Strand | - |
|---|
| Start bp | 234266 |
|---|
| End bp | 235423 |
|---|
| Gene Length | 1158 bp |
|---|
| Protein Length | 385 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 641599605 |
|---|
| Product | multidrug efflux system protein MdtE |
|---|
| Protein accession | YP_001723212 |
|---|
| Protein GI | 170018258 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0845] Membrane-fusion protein |
|---|
| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.0378135 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACAGAA GAAGAAAGCT GTTAATACCG TTGTTATTCT GCGGCGCGAT GCTCACCGCC
TGCGATGACA AATCGGCGGA AAACGCCGCC GCCATGACGC CTGAGGTCGG TGTCGTCACA
CTCTCCCCCG GTTCGGTCAA TGTGTTGAGC GAATTGCCCG GTAGAACCGT TCCTTATGAA
GTTGCCGAGA TACGTCCCCA GGTGGGCGGT ATTATCATTA AACGCAACTT TATCGAAGGC
GATAAAGTGA ACCAGGGCGA TTCGCTGTAT CAGATTGATC CTGCACCTTT ACAGGCCGAG
CTAAACTCCG CCAAAGGCTC GCTGGCGAAA GCGCTCTCTA CCGCCAGCAA TGCCCGCATC
ACCTTTAACC GCCAGGCATC GTTGCTGAAG ACCAACTACG TTAGCCGTCA GGATTACGAC
ACCGCGCGCA CCCAGTTGAA TGAAGCAGAA GCCAATGTCA CCGTCGCCAA AGCGGCTGTT
GAACAGGCGA CGATCAATCT GCAATACGCG AATGTCACCT CGCCGATTAC GGGCGTCAGC
GGGAAATCGT CGGTGACCGT CGGCGCACTC GTTACCGCTA ATCAGGCAGA TTCGCTGGTT
ACCGTACAAC GTCTGGACCC GATTTATGTC GATCTCACGC AGTCGGTGCA AGATTTCTTA
CGCATGAAAG AAGAGGTCGC CAGTGGGCAA ATCAAACAGG TTCAGGGCAG TACGCCAGTA
CAGCTCAATC TGGAAAATGG TAAACGCTAC AGCCAGACCG GCACGCTGAA ATTCTCCGAC
CCGACAGTGG ATGAAACCAC GGGCTCCGTG ACGTTACGGG CGATTTTCCC CAACCCAAAT
GGTGACTTGC TGCCTGGCAT GTACGTCACG GCATTAGTGG ATGAAGGTAG CCGCCAGAAT
GTATTACTGG TGCCGCAGGA AGGCGTCACC CACAACGCCC AGGGTAAAGC AACGGCGCTC
ATTCTGGATA AAGACGATGT CGTGCAGCTA CGCGAAATTG AAGCCAGCAA AGCCATCGGC
GACCAGTGGG TCGTCACCTC TGGCTTGCAG GCTGGCGATC GGGTGATCGT TTCCGGTTTG
CAACGCATTC GTCCGGGTAT CAAAGCACGA GCAATTTCCT CCAGCCAGGA AAACGCCAGC
ACCGAATCGA AACAATAA
|
|---|
| Protein sequence | MNRRRKLLIP LLFCGAMLTA CDDKSAENAA AMTPEVGVVT LSPGSVNVLS ELPGRTVPYE
VAEIRPQVGG IIIKRNFIEG DKVNQGDSLY QIDPAPLQAE LNSAKGSLAK ALSTASNARI
TFNRQASLLK TNYVSRQDYD TARTQLNEAE ANVTVAKAAV EQATINLQYA NVTSPITGVS
GKSSVTVGAL VTANQADSLV TVQRLDPIYV DLTQSVQDFL RMKEEVASGQ IKQVQGSTPV
QLNLENGKRY SQTGTLKFSD PTVDETTGSV TLRAIFPNPN GDLLPGMYVT ALVDEGSRQN
VLLVPQEGVT HNAQGKATAL ILDKDDVVQL REIEASKAIG DQWVVTSGLQ AGDRVIVSGL
QRIRPGIKAR AISSSQENAS TESKQ
|
|---|
| |