| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcolC_0196 |
|---|
| Symbol | |
|---|
| ID | 6066127 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli ATCC 8739 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010468 |
|---|
| Strand | - |
|---|
| Start bp | 221341 |
|---|
| End bp | 222312 |
|---|
| Gene Length | 972 bp |
|---|
| Protein Length | 323 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 641599597 |
|---|
| Product | LysR family transcriptional regulator |
|---|
| Protein accession | YP_001723204 |
|---|
| Protein GI | 170018250 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.00725264 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTAGAAA AAACAATAAA CAATGCGATA TGCGCGTTAC TGTTTCGCTG TGAACAACAA
TCGGTCAAAG AAATGGATAA AATTCACGCA ATGCAGTTGT TCATCAAAGT CGCGGAGCTG
GAAAGTTTTT CCCGCGCGGC GGATTTCTTT GCTTTGCCAA AGGGAAGTGT TTCGCGCCAG
ATACAGGCAC TGGAACATCA ACTTGGCACC CAGCTTCTCC AGCGCACTAC GCGACGGGTC
AAACTCACGC CAGAAGGCAT GACCTATTAT CAACGGGCAA AAGATGTGTT GAGTAATCTC
AGCGAACTGG ACGGTCTGTT TCAACAGGAT GCCACCAGTA TCAGCGGTAA ATTACGCATC
GACATCCCGT CAGGAATCGC GAAAAACCTG TTACTGCCGC GTCTGTCGGA ATTTCTCTAT
CAGCATCCGG GAATTGAGCT GGAACTGAGT AGCCATAACC GTCCGGTAGA TATTCTTCAT
GATGGTTTTG ATTGCGTGAT ACGCACTGGC GCGTTACCGG AAGATGGCGT TATCGCCCGT
CCCCTCGGCA AACTGACCAT GGTCAACTGT GCCAGTCCGC ACTATCTGAC GCGCTTTGGT
TATCCGCAAA GCCCCGATGA TCTGACTTCA CACGCAATAG TGCGTTATAC ACCGCATCTG
GGTGTACATC CGTTAGGTTT TGAGGTTGCC AGCGTTAATG GCGTCCAGTG GTTTAAGTCT
GGCGGCATGT TGACGGTAAA CAGTAGCGAA AACTATCTCG CCGCCGGTCT TGCCGGTCTG
GGGATTATTC AGATCCCGCG CATTGCCGTG CGCGAAGCCC TGCGTGCCGG GCGGCTTATT
GAAGTATTAC CTGGCTACCG TGCCGAGCCG CTCTCCCTTT CGCTGGTTTA TCCGCAGCGT
CGGGAGCTTT CCCGGCGTGT AAACCTGTTT ATGCAGTGGC TGGCTGGCGT AATGAAAGAG
TACCTGGACT GA
|
|---|
| Protein sequence | MLEKTINNAI CALLFRCEQQ SVKEMDKIHA MQLFIKVAEL ESFSRAADFF ALPKGSVSRQ
IQALEHQLGT QLLQRTTRRV KLTPEGMTYY QRAKDVLSNL SELDGLFQQD ATSISGKLRI
DIPSGIAKNL LLPRLSEFLY QHPGIELELS SHNRPVDILH DGFDCVIRTG ALPEDGVIAR
PLGKLTMVNC ASPHYLTRFG YPQSPDDLTS HAIVRYTPHL GVHPLGFEVA SVNGVQWFKS
GGMLTVNSSE NYLAAGLAGL GIIQIPRIAV REALRAGRLI EVLPGYRAEP LSLSLVYPQR
RELSRRVNLF MQWLAGVMKE YLD
|
|---|
| |