| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcolC_0127 |
|---|
| Symbol | |
|---|
| ID | 6068337 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli ATCC 8739 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010468 |
|---|
| Strand | + |
|---|
| Start bp | 140726 |
|---|
| End bp | 141862 |
|---|
| Gene Length | 1137 bp |
|---|
| Protein Length | 378 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 641599529 |
|---|
| Product | secretion protein HlyD family protein |
|---|
| Protein accession | YP_001723138 |
|---|
| Protein GI | 170018184 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1566] Multidrug resistance efflux pump |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATTTAC TGATTATTTT GACCTATGTG GCTTTTGCAT GGGCAATGTT TAAGATCTTC
AAAATTCCCG TAAATAAATG GACCATTCCC ACAGCGGCCC TGGGTGGAAT ATTTATTGTC
AGCGGTCTAA TTCTGTTAAT GAACTATAAC CATCCGTATA CCTTTAAAGC GCAAAAAGCG
GTTATTTCTA TTCCTGTTGT CCCACAGGTG ACTGGTGTGG TGATTGAAGT GACGGATAAG
AAAAATACGC TGATTAAAAA AGGTGAGGTG CTATTTCGAC TGGACCCGAC GCGTTATCAG
GCGCGGGTGG ATCGGCTGAT GGCGGATATC GTTACCGCAG AACATAAACA GCGGGCGTTG
GGCGCAGAGT TAGATGAGAT GGCGGCGAAT ACTCAGCAGG CAAAGGCCAC GCGGGATAAA
TTCGCTAAAG AGTATCAGCG TTACGCACGT GGCAGCCAGG CGAAAGTAAA CCCGTTTTCA
GAACGCGATA TCGATGTGGC GCGGCAAAAT TATCTGGCGC AGGAAGCCTC CGTGAAGTCA
TCGGCGGCGG AACAAAAACA GATCCAGAGC CAGCTGGATA GCCTGGTGTT GGGTGAACAT
TCTCAAATCG CCAGCCTGAA AGCACAGCTC GCGGAAGCAA AATATAACCT TGAGCAGACG
ATAGTGCGTG CGCCGAGCGA TGGTTATGTG ACCCAGGTAC TGATTCGTCC GGGTACCTAT
GCCGCGTCGC TGCCGCTACG TCCGGTGATG GTGTTTATAC CCGATCAGAA ACGACAAATC
GTGGCGCAGT TCCGTCAGAA CTCCTTGCTG CGACTGGCTC CTGGCGACGA TGCGGAAGTG
GTGTTTAATG CTCTGCCAGG TAAGGTATTC AGCGGTAAGC TGGCAGCCAT TAGTCCAGCC
GTTCCCGGCG GAGCTTATCA GTCGACCGGC ACCTTACAGA CGTTAAACAC AGCGCCGGGT
TCAGATGGCG TTATCGCGAC CATTGAACTG GATGAGCACA CTGATTTGAG CGCTTTACCA
GACGGTATTT ACGCCCAGGT GGCGGTTTAC TCTGATCATT TCAGCCATGT CTCGGTGATG
CGCAAAGTGC TATTACGCAT GACCAGCTGG GTGCATTACC TTTATCTCGA TCATTAA
|
|---|
| Protein sequence | MDLLIILTYV AFAWAMFKIF KIPVNKWTIP TAALGGIFIV SGLILLMNYN HPYTFKAQKA
VISIPVVPQV TGVVIEVTDK KNTLIKKGEV LFRLDPTRYQ ARVDRLMADI VTAEHKQRAL
GAELDEMAAN TQQAKATRDK FAKEYQRYAR GSQAKVNPFS ERDIDVARQN YLAQEASVKS
SAAEQKQIQS QLDSLVLGEH SQIASLKAQL AEAKYNLEQT IVRAPSDGYV TQVLIRPGTY
AASLPLRPVM VFIPDQKRQI VAQFRQNSLL RLAPGDDAEV VFNALPGKVF SGKLAAISPA
VPGGAYQSTG TLQTLNTAPG SDGVIATIEL DEHTDLSALP DGIYAQVAVY SDHFSHVSVM
RKVLLRMTSW VHYLYLDH
|
|---|
| |