| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcolC_0023 |
|---|
| Symbol | |
|---|
| ID | 6068477 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli ATCC 8739 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010468 |
|---|
| Strand | + |
|---|
| Start bp | 23681 |
|---|
| End bp | 24889 |
|---|
| Gene Length | 1209 bp |
|---|
| Protein Length | 402 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 641599427 |
|---|
| Product | IS605 family transposase OrfB |
|---|
| Protein accession | YP_001723037 |
|---|
| Protein GI | 170018083 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0675] Transposase and inactivated derivatives |
|---|
| TIGRFAM ID | [TIGR01766] transposase, IS605 OrfB family, central region |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAAACGAT TACAGGCATT TAAATTCCAG TTAAGACCCG GTGGTCAACA GGAGCGTGAA
ATGAGGCGCT TCGCAGGCGC ATGTCGTTTC GTTTTCAATC GTGCTCTGGC GCTTCAGAAT
GAGAATCATG AGGCCGGTAA TAAATACATC CCTTACGGGA AAATGGCTTC CTGGCTGGTT
GAGTGGAAAA ACGCCACTGA AACGCAATGG CTTAAAGATT CGCCCTCACA GCCATTGCAA
CAGTCACTGA AAGGCCTTGA GCGGGCTTAC AAAAACTTCT TCCAGAAGCG GGCTGCTTTT
CCCCGATTCA AAAAGCGGGG ACAGAATGAT GCATTCCGCT ACCCGCAGGG CGTTAAGCTC
GATCAGGAAA ACAGCCGTAT TTTTCTGCCG AAACTGGGCT GGATGCGCTA CCGGAACAGC
CGTCAGGTCA CGGGTGTTGT GAAAAATGTC ACTGTCAGCC AGTCCTGCGG TAAGTGGTAC
ATCAGTATTC AGACAGAAAG TGAAGTATCA ACTCCGGTTC ACCCTTCAGC ATCAATGATC
GGGCTGGATG CTGGCGTGGC TAAACTCGCC ACGCTGTCAG ATGGCACAGT CTTTGAGCCT
GTAAACAGTT TTCAGAAAAA CCAGAAGACG CTGGCGAGAC TTCAGCGACA GTTAAGCCGC
AAGGTCAAAT TCAGCAACAA CTGGCAGAAG CAGAAACGCA AAATACAGCG ACTGCATTCC
TGTATCGCAA ATATCCGCAG GGACTACCTT CACAAAGTCA CAACGACCGT CAGCAAAAAC
CACGCAATGA TAGTCATTGA GGATTTGAAG GTCAGCAACA TGTCAAAGTC AGCAGCGGGT
ACGGTCAGCC TGCCGGGGCG CAATGTCCGG GCAAAATCAG GTTTAAACCG TTCGATACTG
GATCAGGGCT GGTATGAAAT ACGCCGCCAG CTTGCGTACA AGCAGCTCTG GCGTGGTGGT
CAGGTGCTTG CTGTTCCGCC AGCGTACACA AGCCAGCGTT GCGTGTGCTG TGGTCATACA
GCGAAAGAAA ATCGCCTGTC ACAAAGTAAA TTCAGATGCC AGGTATGTGG ATATACAGCG
AACGCCGATG TAAATGGCGC TCGTAACATT TTAGCGGCGG GGCACGCCGT TCTTGCCTGT
GGAGAGATGG TGCAGTCAGG CCGCTCGTTG AAGCAGGAAC CCACCGAAAT GATTCAGGCG
ACAGCCTGA
|
|---|
| Protein sequence | MKRLQAFKFQ LRPGGQQERE MRRFAGACRF VFNRALALQN ENHEAGNKYI PYGKMASWLV
EWKNATETQW LKDSPSQPLQ QSLKGLERAY KNFFQKRAAF PRFKKRGQND AFRYPQGVKL
DQENSRIFLP KLGWMRYRNS RQVTGVVKNV TVSQSCGKWY ISIQTESEVS TPVHPSASMI
GLDAGVAKLA TLSDGTVFEP VNSFQKNQKT LARLQRQLSR KVKFSNNWQK QKRKIQRLHS
CIANIRRDYL HKVTTTVSKN HAMIVIEDLK VSNMSKSAAG TVSLPGRNVR AKSGLNRSIL
DQGWYEIRRQ LAYKQLWRGG QVLAVPPAYT SQRCVCCGHT AKENRLSQSK FRCQVCGYTA
NADVNGARNI LAAGHAVLAC GEMVQSGRSL KQEPTEMIQA TA
|
|---|
| |