| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YPK_4238 |
|---|
| Symbol | |
|---|
| ID | 6088829 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Yersinia pseudotuberculosis YPIII |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010465 |
|---|
| Strand | + |
|---|
| Start bp | 4677440 |
|---|
| End bp | 4678177 |
|---|
| Gene Length | 738 bp |
|---|
| Protein Length | 245 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 641599337 |
|---|
| Product | polar amino acid ABC transporter, inner membrane subunit |
|---|
| Protein accession | YP_001722947 |
|---|
| Protein GI | 170026442 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0765] ABC-type amino acid transport system, permease component |
|---|
| TIGRFAM ID | [TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATCTAC ATCATCTGAC TGATTGGCTA TTAGCCCCGC AATATCTTGG TTGGCTGTGG
GATGGTTTTT TACTGACGTT GTGGATTTCC GCCTGTACGG TGGTGGCTGC CACGTTATTG
GGATTTTTGC TGGCCGCGGC CAGAGACAGT GAGTTAAAGG CCTTGAAAGG CTTTGCTATT
GGCTACAGTG CCTTATTCCG AAATACTCCT CTGCTGATCC AATTATTCTT TTGGTACTTT
GCTGCCAGCC AATTCCTGCC AGCTTCTTGG ATCCCTTGGC TCAATACTCC CCATGAAATT
ACGCTTGCCG GATTAACTCT GGCCTGGCCC TCTTTTGAGT TTTTAGCCGG TTTTGTCGGG
TTGACACTCT ATTCCACCGC ATTTATTGCT GAAGAGCTGC GTGCGGGCAT CAGCGGCGTA
GCCAAGGGGC AGAAATATGC TGCACATGCG CTGGGGCTGA CGGGGTGGCA ATCGATGCGG
TATGTGGTTT TGCCGCAGGC TTTGAAAATA GCCATGCCTC CGTTGCTGGG CCAATATATG
AATATTATTA AAAACTCTTC ATTGGCAATG GCTATTGGTG TAGCTGAACT CTCCTATGCT
TCCCGGCAGG TTGAAACTGA AACATTACGG ACGTTTCAGG CATTCGGGGT TGCAACCCTA
TTGTATATTT TCATCATCGC GCTAATTGAG GCTTGGGGTA TGTGGCGTCA ACAGCGAACC
GTCGTCCGAG GGCACTGA
|
|---|
| Protein sequence | MNLHHLTDWL LAPQYLGWLW DGFLLTLWIS ACTVVAATLL GFLLAAARDS ELKALKGFAI
GYSALFRNTP LLIQLFFWYF AASQFLPASW IPWLNTPHEI TLAGLTLAWP SFEFLAGFVG
LTLYSTAFIA EELRAGISGV AKGQKYAAHA LGLTGWQSMR YVVLPQALKI AMPPLLGQYM
NIIKNSSLAM AIGVAELSYA SRQVETETLR TFQAFGVATL LYIFIIALIE AWGMWRQQRT
VVRGH
|
|---|
| |