Gene YPK_4236 details

Gene Information

• Locus tag: YPK_4236
• ID: 6090062
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Yersinia pseudotuberculosis YPIII
• Kingdom: Bacteria
• Replicon accession: NC_010465
• Strand: +
• Start bp: 4675524
• End bp: 4676195
• Gene Length: 672 bp
• Protein Length: 223 aa
• Translation table: 11
• GC content: 41%
• IMG OID: 641599335
• Product: hypothetical protein
• Protein accession: YP_001722945
• Protein GI: 170026440
• COG category: [M] Cell wall/membrane/envelope biogenesis
• COG ID: [COG1664] Integral membrane protein CcmA involved in cell shape determination

Plasmid Coverage information

• Num covering plasmid clones: 29
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGCTTTT ACATACGCAA GAACATGGTG CTTAGTCTCT TGTGGGGCCT GTGGGTTGCG 
GCTTTAGTGG CCTATGCTAT CTACGATTTG TTTTTCTATC TTTTTATCGT TCCTGCATTA 
TTCCTCATCT TTACAGTGAG TAATGTTATG TTCAAAAAGA AAGTAAATAG TAATAATGAC 
GGTTCTTCTA GCGTAAATAT CCCTAGCCAA ACGAGTATGC CATTATCTAA TGCTTCACAG 
GAAAATGCTA AAAACAATAC TATTATTGCC GCAGGTACAC AGTTGAAAGG CAATATTAAT 
CTGGATGGTG ATATTCAGAT TTATGGTGTG GTGATGGGGG ATATCATCGT CAATGAAGGT 
TCAATCAGAT TAATGCGTAG TGGGCAGATT GAGGGAAATT TAACTGCCCC CCATATTACG 
GTTGATGGCA GGGTTGAAGG GGTTTGTATT TCTGATGATC TGGAAATTCT GGAACATGGT 
CGCTTAAAAG GTATCGTGAA GGGCAGTAAT TTCTCAATCA AAAAGGGCGG TATTTTTGTT 
GGTCAGTCGG AAATTACGGA AGAACCGGTT AGCCAAGTCA AGAGTAAAGC CAAGCCAGTT 
ATCGCCATAA GTCAGGATAA AGCTAAAGCA GAGGACGTCG CTGCCGGCCA GCACAGCAGT 
AACGTTTCTT GA 

 

Protein sequence

MSFYIRKNMV LSLLWGLWVA ALVAYAIYDL FFYLFIVPAL FLIFTVSNVM FKKKVNSNND 
GSSSVNIPSQ TSMPLSNASQ ENAKNNTIIA AGTQLKGNIN LDGDIQIYGV VMGDIIVNEG 
SIRLMRSGQI EGNLTAPHIT VDGRVEGVCI SDDLEILEHG RLKGIVKGSN FSIKKGGIFV 
GQSEITEEPV SQVKSKAKPV IAISQDKAKA EDVAAGQHSS NVS