| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YPK_4175 |
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| Symbol | ligB |
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| ID | 6088446 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Yersinia pseudotuberculosis YPIII |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010465 |
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| Strand | - |
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| Start bp | 4602612 |
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| End bp | 4604315 |
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| Gene Length | 1704 bp |
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| Protein Length | 567 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 641599274 |
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| Product | NAD-dependent DNA ligase LigB |
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| Protein accession | YP_001722887 |
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| Protein GI | 170026382 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.388697 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACATAC TGAATCTAAA GATAATAATG TTCCTATTAA TATCTAACAC CATAGTGGTG
GGCGGTGCTT GGGCTACATC AACATGCCCT GATTGGCCTG CAACCAGAAT AGCGGTTGAG
ATTAACGCGT TGGAGCAACA GTTGAATAAG TGGTCGGCCG CTTACCATCA GCAAGGCCAT
AGCCCGGTCA CGGATGACAT TTATGATCAA TTACAGGACA AATTACGTGT GTGGCAATCC
TGTAGGGGGT TACCTGATAA GACGGAAAGC CAGCCGATCC CCGGCAAAGG GCAATTTCTT
CACCCAGTTG CCCATACCGG GTTAAAAAAA CTCAAAGATG AAACCGCCCT CACAAGGTGG
ATGGCGGGGC GGAAAAATCT CTGGGTACAA CCCAAGGTCG ACGGTGTGGC AGTGACACTG
GTTTATCACG GGGGGAAATT GGTGCAACTT CTTAGTCGAG GAAATGGAGT AAAAGGTCAA
AACTGGACAG AAAAAGCGCC ATTTATTTCT GCTATTCCTC AATATATTGC AAATGCGCCT
GCACTATTAA CGTTGCAAGG GGAGTTGTTT CTACTGATGG ATGGCCACCA GCAAGCAAAA
TCGGGTGGGG TGAATGCCAG ATCAACGGTG GCAGGTGCAC TGATGCGCAA ATCTCCGTCT
CCGCTATTAG CTCAAGTTGG GGTCTTTATT TGGGCATGGC CTGATGGCCC AACAACCATG
AAAGAGAAGG TGGCACTATT ACAGGTAATG GGTTTTCCTT TTACAGCTAA ATACAGCGAG
CCCGTCATGT CGCATCTTGA TGTTGTGCAA TGGCGTCAGT TCTGGTTTCA AGCACCACTG
CCGTTTGTCA CCGATGGTGT TGTGGTCAGG CAAGAGGAGG AGCCAGCCGG TCGTTATTGG
CAGGCAACAC CGGGGCAGTG GTCTATGGCG TGGAAGTATC CGCCTTTGCA ACACATTGCC
GAAGTAAAAG ATATTCATTT TACCCTTGGA CGAACGGGTA AAGGCACGGT GGTATTAGAG
GTTTTACCGA TAAAAATTGA TGATAAATGG ATTCGTCGAG TGAATATTGG TTCGGTCACC
CGTTGGAAAC AATGGGACAT CGCTCCTGGT GATCACATTA CATTGGCACT TGCCGGGCAT
GGTATCCCTC GGCTAGATAA CGTTGTCTGG CGAGTACACC AACGGAATAC TATTACGGCA
CCCAATTGGG ATAAATTCCA TCAGCTCAGT TGCTTTCAAC GCTTACCACA TGGCTGTGAA
CCTCAGTTTT TATCCCGCTT GATATGGCTT AGTGGCCCAG GGGGGCTAGA TATTGGCGGC
ATCGGTGGCG GCTTTTGGCA AGAGCTTATT CACCATGAGT TAATTAATGA TTTGGTCGGA
TGGTTATTAC TAACACCAGA GCAAATTGCA AGTATCCCTG GAATTGGAAA TGCGCGGGCT
GAAAAAATTT ATCAACAGTT TCAACGGGCA AAGCAGCAAC CCTTTTCTCG TTGGTTGCTG
GCATTGGGGT TCCCGCAGGT TGTTTCCGTT GACGCGCAGT GGCAGGTTGT ATTGCGCCGG
AGTCTATCTG AATGGGCCAC CATGGCCGGG ATTGGGCAAA TGAGAGCAAA ACAAATTAAG
CATTTTTTGG ATCACCCCGA CGTACAAGCA CTGGCTGATT TCTTATCTAC TCAGAAAGTT
GTTGGGTTCG AGCTCACAGA GTAA
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| Protein sequence | MNILNLKIIM FLLISNTIVV GGAWATSTCP DWPATRIAVE INALEQQLNK WSAAYHQQGH
SPVTDDIYDQ LQDKLRVWQS CRGLPDKTES QPIPGKGQFL HPVAHTGLKK LKDETALTRW
MAGRKNLWVQ PKVDGVAVTL VYHGGKLVQL LSRGNGVKGQ NWTEKAPFIS AIPQYIANAP
ALLTLQGELF LLMDGHQQAK SGGVNARSTV AGALMRKSPS PLLAQVGVFI WAWPDGPTTM
KEKVALLQVM GFPFTAKYSE PVMSHLDVVQ WRQFWFQAPL PFVTDGVVVR QEEEPAGRYW
QATPGQWSMA WKYPPLQHIA EVKDIHFTLG RTGKGTVVLE VLPIKIDDKW IRRVNIGSVT
RWKQWDIAPG DHITLALAGH GIPRLDNVVW RVHQRNTITA PNWDKFHQLS CFQRLPHGCE
PQFLSRLIWL SGPGGLDIGG IGGGFWQELI HHELINDLVG WLLLTPEQIA SIPGIGNARA
EKIYQQFQRA KQQPFSRWLL ALGFPQVVSV DAQWQVVLRR SLSEWATMAG IGQMRAKQIK
HFLDHPDVQA LADFLSTQKV VGFELTE
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