Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | YPK_4084 |
Symbol | |
ID | 6090974 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Yersinia pseudotuberculosis YPIII |
Kingdom | Bacteria |
Replicon accession | NC_010465 |
Strand | - |
Start bp | 4508718 |
End bp | 4510526 |
Gene Length | 1809 bp |
Protein Length | 602 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 641599183 |
Product | type I secretion system ATPase |
Protein accession | YP_001722796 |
Protein GI | 170026291 |
COG category | [R] General function prediction only |
COG ID | [COG4618] ABC-type protease/lipase transport system, ATPase and permease components |
TIGRFAM ID | [TIGR01842] type I secretion system ABC transporter, PrtD family |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGGAATCTT GCAAAACGCC CAGAGCTTCA TCAGTACCGC CGACAATTCT GTCGGTTCTA GCGGGTAATA AAAAAATCCT CTGGGGCATC GGGCTATTTA CTGCCGTAAT AAACTTGCTG ATGTTGGCAC CGGCCATTTA TATGCTGCAA GTGTATGATC GCGTCCTCGC CTCAGCGAAC ACCATGACAT TATTGATGCT CACTGTTCTG GTGCTGGGCG TATTTGTTTT TATTGGTTTA TTAGAATGGG TTCGCAGTGC AGTAGTGATT CGCTTGGGGA CTCAGATTGA TATGCAACTC AATCAGCCGG TCTTTAACGC GGCCTTTGCC GCCAATCTTA AGGGACATAA CACGCCAGCC GCGCAAGCGC TAAATGACCT GACAGTGTTA CGCCAGTTTG CCACCGGTAA TGCGTTATTT GCCTTTTTTG ATGCACCTTG GTTCCCACTT TATTTGCTGG TGATTTTTTT GCTTCATCCG TGGCTGGGGA TGCTGGCCGC CGCAGGCGCA GGTATATTGG TTTTTCTCGC CTGGCTCAAT CAGTGGATCT GTAAAAAACC ATTACACGAT GCCTCAATTA TCACCTCACA CGCGACACAA CAAGCCAATG CTAATTTACG TAATGCGGAT GTCATTGAAG CGATGGGGAT GCTCAAAGCA TTACGTGAAC GTTGGTTAAT GCAGCACGCG AATTTTCTCT ACCAACAAAA TCTTGCCAGC GATAAAAGTA GCCGGGTGAC GGCGGTCGCT AAATCAAGCC GCCAGGCATT GCAATCGATG ATGTTAGGTC TGGGAGCGTT ACTGGTGATT TATAATGAAA TCACGGCTGG CGTGATGATT GCCGGGTCAA TTTTAATCGG GCGGGTGCTG GGGCCTATCG ATCAACTTAT TGCGGTCTGG AAACAATGGA GCCACGCCCG GCTGGCTTAT CAACGTCTCT CCCAATTACT GGCGCAGCAT CCATCATCAC CCACCGGCAT GGTTTTGCCT GCCCCACAGG GGAAACTAAA CGTTACGCAA CTTATGGCCT GCAAGCCGGG CACGCACATT CCAGTATTAC ACTCCATCAA CTTTGAACTG CAACCCGGTG ATGTGCTAGG TATTTTGGGG CCATCAGGCA GTGGTAAATC CACGCTGGCA AAACTCTTGG TCGCCAGCCA GCCCGCATTC AGCGGAACAG TGCGTTTAGA TAGCGCAGAC CTTTCTCGTT GGGATAAAAC GCAGCTAGGG GAATTTATCG GTTACCTGCC ACAAAATATT CAGCTATTCC GCGGCACTGT TGCTGAAAAT ATTGCACGTT TTGGCGCTAT TGATACCGCA AAAGTGGTCG CAGCTGCACA GTTGGCAGAT GTACACAATT TAATTCTGCA TTTACCGCAA GGGTATGACA CCCCGTTAGG TGACGACGGC GAGGGGTTAT CCGGTGGTCA ACGTCAACGT ATCGCCTTAG CTCGGGCAAT GTACGGAATA CCTCGGCTTA TCGTATTGGA TGAACCCAAT GCCAGTTTGG ATAAAGAAGG GGAGCAAGCC TTATTAGCCA GTATTATCCA GCTAAAACAA CAAGGTTGCA CCATCGTGAT GATCACCCAT AAACCAGAGC TGTTATCTGG CAGTGACTAT TTGCTGTTTT TAAAGAATGG GCAAATGGAT CTATTTGATC GTACTCAGGC GGTCTTACAG AACATTCAGG GTAAGGATAA GCCTGCCGTG CAACCTGAAG CGAAAATACG GAATAGCCGA AGCGGTTGGA GCAACGGTGT GTCATATGGC ATCGGGCCGG CTCGTACTAC ATCATCACCG AAGCCATGA
|
Protein sequence | MESCKTPRAS SVPPTILSVL AGNKKILWGI GLFTAVINLL MLAPAIYMLQ VYDRVLASAN TMTLLMLTVL VLGVFVFIGL LEWVRSAVVI RLGTQIDMQL NQPVFNAAFA ANLKGHNTPA AQALNDLTVL RQFATGNALF AFFDAPWFPL YLLVIFLLHP WLGMLAAAGA GILVFLAWLN QWICKKPLHD ASIITSHATQ QANANLRNAD VIEAMGMLKA LRERWLMQHA NFLYQQNLAS DKSSRVTAVA KSSRQALQSM MLGLGALLVI YNEITAGVMI AGSILIGRVL GPIDQLIAVW KQWSHARLAY QRLSQLLAQH PSSPTGMVLP APQGKLNVTQ LMACKPGTHI PVLHSINFEL QPGDVLGILG PSGSGKSTLA KLLVASQPAF SGTVRLDSAD LSRWDKTQLG EFIGYLPQNI QLFRGTVAEN IARFGAIDTA KVVAAAQLAD VHNLILHLPQ GYDTPLGDDG EGLSGGQRQR IALARAMYGI PRLIVLDEPN ASLDKEGEQA LLASIIQLKQ QGCTIVMITH KPELLSGSDY LLFLKNGQMD LFDRTQAVLQ NIQGKDKPAV QPEAKIRNSR SGWSNGVSYG IGPARTTSSP KP
|
| |