| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YPK_4083 |
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| Symbol | |
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| ID | 6088828 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Yersinia pseudotuberculosis YPIII |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010465 |
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| Strand | - |
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| Start bp | 4507314 |
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| End bp | 4508642 |
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| Gene Length | 1329 bp |
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| Protein Length | 442 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 641599182 |
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| Product | HlyD family type I secretion membrane fusion protein |
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| Protein accession | YP_001722795 |
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| Protein GI | 170026290 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | [TIGR01843] type I secretion membrane fusion protein, HlyD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTGCCTG AATCCGCCTG TTATTCGGTT GCGAATGCCA ATCGCCAACC ACCACTCCAA
ATAAACAGTG GGCGCTATCT CAATATAGGT GGGGGGCTGG TCGTTATCGG CTTCATCGGC
TTTTTACTTT GGGCGGGGTT AGCGCCGTTA GATAAAGGCG TTGCCGTGAC CGGGCTGCTT
GTGGTGGCAG AAAACCGCAA AGTGATCCAG CCGCTGCAAG GGGGGCGTAT TCAGCAACTG
CATGTCACTG AAGGCGACGA AATAGTGTCT GGGCAATTAT TGGTCACGCT GGATGACACG
GCGATACGCA ATCAGCGGGA TAATTTACAG CATCAGTATC TAAGCGCCCT TGCTCAGGAA
GCACGTTTGA CTGCTGAGCA AAACGATCTG GATGTGATCA CTTTCCCGCA GGCGCTGCTT
GAGCACGCAA CACAACCAGC GGTTGAACGT AATATTATTT TGCAGCAACA ACTTTTACAT
CACCGCCGCC AGGCGCACTT GAGTGAAATC GCCCGGTTAT CGACACAGCT CACTCGCCAT
CAGGCTCGGC TCGATGGGTT GCAAGCTATG CGGAGCAATC ATCAACGTCA ATCCAATTTA
TTCCAGCAAC AATTAGACAG TGTGCAGTTA TTGGCAAAGG ACGGTTATAT TGCCAAAAAT
AAATTGTTAG AAATGGAAAG CCAGTTAACC TCACTCCAGG CACGAGTAGA ACAAGGTACC
AGCGATATTG CGGAAGCACA TAAGCTTATC GATGAAACAG AACAACATGT TTTACAACGG
CGCGAACAAT ATCAAAGTGA GAATAGCGAG CAATTAGCCA AGGCACAGCA AAACACCCAA
GAATTGGTCC AACGTTTAAA TATTGCAGAA TATGAATTGA GTCATACCCG TATTTTTGCA
CCAGTCAGTG GTTCAGTTAT CGCGTTGGCT CAACACACTG TGGGTGGCGT AGTGAGCTCA
GGGCAGGCAT TAATGGAAAT TGTCCCCAGT GGGCAGCCGT TATTTGTTGA AGCTCAGTTG
CCGGTAGAGC TAATTGATAA GGTTACGGTC GGGCTACCTG TCGATCTCAA TTTTTCTGCT
TTTAATCAAA GTAATACCCC CCGGCTACAA GGCTCTGTAT GGCGCATCGG AGCCGATCGT
ATACAACCCC CACCTACTTC ACCGCCTTAT TACCCTTTAA CCGTTGCGAT TGATCTTGAC
CCGACGGAAC TGGCAATCCG TCCAGGTATG GCCGTTGATG TTTTTATACG TACCGGAGAA
AGGTCATTAC TCAGCTATTT ATTTAAGCCA TTCACTGATC GCCTGCACCT CGCGTTAGCC
GAGGAATAA
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| Protein sequence | MLPESACYSV ANANRQPPLQ INSGRYLNIG GGLVVIGFIG FLLWAGLAPL DKGVAVTGLL
VVAENRKVIQ PLQGGRIQQL HVTEGDEIVS GQLLVTLDDT AIRNQRDNLQ HQYLSALAQE
ARLTAEQNDL DVITFPQALL EHATQPAVER NIILQQQLLH HRRQAHLSEI ARLSTQLTRH
QARLDGLQAM RSNHQRQSNL FQQQLDSVQL LAKDGYIAKN KLLEMESQLT SLQARVEQGT
SDIAEAHKLI DETEQHVLQR REQYQSENSE QLAKAQQNTQ ELVQRLNIAE YELSHTRIFA
PVSGSVIALA QHTVGGVVSS GQALMEIVPS GQPLFVEAQL PVELIDKVTV GLPVDLNFSA
FNQSNTPRLQ GSVWRIGADR IQPPPTSPPY YPLTVAIDLD PTELAIRPGM AVDVFIRTGE
RSLLSYLFKP FTDRLHLALA EE
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