Gene YPK_4079 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagYPK_4079 
Symbol 
ID6091073 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameYersinia pseudotuberculosis YPIII 
KingdomBacteria 
Replicon accessionNC_010465 
Strand
Start bp4502978 
End bp4503895 
Gene Length918 bp 
Protein Length305 aa 
Translation table11 
GC content49% 
IMG OID641599178 
ProductDNA-binding transcriptional regulator OxyR 
Protein accessionYP_001722791 
Protein GI170026286 
COG category[K] Transcription 
COG ID[COG0583] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones42 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAATATTC GTGATCTAGA GTACTTAGTG GCGTTGGCTG AATTTAGGCA CTTCCGGCGT 
GCCGCCGACT CCTGTCATGT CAGCCAACCC ACATTAAGCG GTCAGATTCG TAAACTGGAA
GATGAGTTGG GGATCATGTT GTTGGAGCGA ACTAGTCGTA AGGTGTTGTT TACACAGGCT
GGTTTACTGT TGGTGGAGCA GGCGAAAACG GTATTACGGG AAGTGAAAGT ACTGAAAGAG
ATGGCCAGTT TACAGGGTGA AAGTATGTCT GGGCCGTTGC ATATTGGGCT TATTCCTACC
GTTGGGCCTT ATCTGTTACC ACAAATTATT CCTATGCTGC ATAAAACATT CCCCAAATTG
GAAATGTATC TGCATGAAGC CCAGACCCAA AATCTCTTAG CCCAGTTGGA TAGTGGTAAA
TTGGATTGTG CCATTTTAGC CCTGGTCAAA GAGACCGAAG CTTTTATCGA AATTCCGTTA
TTTGACGAGC CGATGAATCT AGCCATTTAT GCCGATCATC CGTGGGCGAA CCGCGAAAGA
GTGGAGATGC ATGAATTGGC GGGAGAGAAG TTACTGATGC TGGAAGATGG TCATTGTTTA
CGTGATCAGG CGATGGGCTT TTGCTTCCAG GCTGGAGCGG ATGAAGATAC TCACTTCCGG
GCGACTAGCT TGGAAACCCT GCGCAACATG GTCGCAGCGG GTAGTGGTAT TACGCTGTTG
CCAGCACTGG CTGTGCCGAA TGAAAGACAG CGCGATGGTG TATGTTATCT GGAGTGCTAC
AAACCTGTCC CTAAACGCAC CATTGCGTTG GTGTATCGCC CCGGTTCTCC ATTGCGTGGC
CGCTATGAAC AACTTGCCGA GGCAATACGT GATCACATGC AAGAGCGCAT GGCCCCATCA
TTAGAACAGG CGATTTAA
 
Protein sequence
MNIRDLEYLV ALAEFRHFRR AADSCHVSQP TLSGQIRKLE DELGIMLLER TSRKVLFTQA 
GLLLVEQAKT VLREVKVLKE MASLQGESMS GPLHIGLIPT VGPYLLPQII PMLHKTFPKL
EMYLHEAQTQ NLLAQLDSGK LDCAILALVK ETEAFIEIPL FDEPMNLAIY ADHPWANRER
VEMHELAGEK LLMLEDGHCL RDQAMGFCFQ AGADEDTHFR ATSLETLRNM VAAGSGITLL
PALAVPNERQ RDGVCYLECY KPVPKRTIAL VYRPGSPLRG RYEQLAEAIR DHMQERMAPS
LEQAI