Gene YPK_4026 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagYPK_4026 
Symbol 
ID6090008 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameYersinia pseudotuberculosis YPIII 
KingdomBacteria 
Replicon accessionNC_010465 
Strand- 
Start bp4440303 
End bp4441433 
Gene Length1131 bp 
Protein Length376 aa 
Translation table11 
GC content49% 
IMG OID641599123 
ProductTDP-4-oxo-6-deoxy-D-glucose transaminase 
Protein accessionYP_001722741 
Protein GI170026236 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0399] Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis 
TIGRFAM ID[TIGR02379] TDP-4-keto-6-deoxy-D-glucose transaminase 


Plasmid Coverage information

Num covering plasmid clones43 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATTCCAT TTAACACTCC ACCGATAGTG GGCACTGAAC TGGGTTATAT GCAGGCTGCG 
ATGAGCAGTG GCAAGTTATG CGGTGATGGT GGTTTTACCC GTCGCTGCCA GCAGTGGATG 
GAGAAACGTT TTAACTGCCC AAAAGTGTTA CTGACGCCAT CTTGTACCGC CTCGTTGGAA 
ATGGCCGCGT TATTGCTGGA TATCAAGCCC GGTGATGAAG TGATCATGCC AAGTTTTACC 
TTTGTTTCCA CCGCCAATGC CTTTGTGCTG CGCGGGGCCA AAATGGTGTT TGTCGATATC 
CGTCCAGACA CCATGAATAT CGATGAAACC AAGATTGAAG CGGCGATCAC CGATAAAACC 
CGGGTTATTG TGCCAGTCCA CTACGCAGGG GTTGCCTGTG AGATGGATAC CATCATGGCA 
CTGGCGAAAA AGCATAATTT GTTTGTGGTA GAAGATGCGG CTCAAGGCGT GATGTCAACC 
TACAAAGGTA AAGCTCTGGG TACCATTGGC CATATTGGCT GCTTCAGCTT CCATGAAACC 
AAAAATTACA CTGCGGGCGG TGAAGGGGGG GCGACGTTGA TCAATGATCC TTCATTGATT 
GATCGTGCAG AAATTATCCG TGAAAAGGGC ACCAACCGTA GCCAATTCTT CCGTGGTCAG 
GTGGATAAAT ACACCTGGCG TGACATCGGC TCCAGCTACT TGATGTCTGA TTTACAGGCC 
GCTTACCTGT GGGGCCAGTT AGAGGCAGCA GAGCAGATCA ACGAACGCCG TCTGGCGCTA 
TGGCATGGTT ATTATAATGC TTTCAAACCG TTGGCCGATG CTGGGCGCAT TGGTTTACCG 
GTGATCCCAG GCAACGTGGT GCAAAATGCC CACATGTTTT ATATTAAACT GCGTGATATT 
GAGGAGCGCT CTGCATTTAT CAGCTATTTA AAAGAAGCGG ATATTATGGC GGTATTCCAC 
TACATCCCAT TACATGCGTG TCCAGCAGGT GAGGCGTTTG GCCGTATGGC TGGCGAAGAC 
CGCTTTACCT CCAAGGAGAG TGAGCGTCTG GTGCGCTTAC CTATTTTCTA CAACCTGACT 
GATGTTAATC AGAGCACGGT TATTAATACT GTGCTGAGTT TCTTCGTCTG A
 
Protein sequence
MIPFNTPPIV GTELGYMQAA MSSGKLCGDG GFTRRCQQWM EKRFNCPKVL LTPSCTASLE 
MAALLLDIKP GDEVIMPSFT FVSTANAFVL RGAKMVFVDI RPDTMNIDET KIEAAITDKT 
RVIVPVHYAG VACEMDTIMA LAKKHNLFVV EDAAQGVMST YKGKALGTIG HIGCFSFHET 
KNYTAGGEGG ATLINDPSLI DRAEIIREKG TNRSQFFRGQ VDKYTWRDIG SSYLMSDLQA 
AYLWGQLEAA EQINERRLAL WHGYYNAFKP LADAGRIGLP VIPGNVVQNA HMFYIKLRDI 
EERSAFISYL KEADIMAVFH YIPLHACPAG EAFGRMAGED RFTSKESERL VRLPIFYNLT 
DVNQSTVINT VLSFFV