Gene YPK_4021 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagYPK_4021 
Symbol 
ID6089205 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameYersinia pseudotuberculosis YPIII 
KingdomBacteria 
Replicon accessionNC_010465 
Strand
Start bp4433907 
End bp4435298 
Gene Length1392 bp 
Protein Length463 aa 
Translation table11 
GC content50% 
IMG OID641599118 
Productputative transport protein YifK 
Protein accessionYP_001722736 
Protein GI170026231 
COG category[E] Amino acid transport and metabolism 
COG ID[COG1113] Gamma-aminobutyrate permease and related permeases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.0268328 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCAGACA ACGCAGAGAA AAAAGGATTA CACCGTGGGC TGGAAGCTCG GCATATCGAA 
CTGATAGCGT TGGGCGGTAC CATTGGTGTC GGGTTATTTA TGGGGTCAGC AAGCACGTTG
AAATGGGCAG GGCCGTCAGT ATTACTGGCT TATATCATTG CGGGCTTATT TGTATTCTTC
ATTATGCGCG CAATGGGGGA AATGCTGTAT CTGGAGCCCG TGGCTGGATC CTTCGCAGTC
TATGCGCATA AGTATCTCAG TCCCTATTTT GGCTATCTGA CGGCTTGGGG CTACTGGTTT
ATGTGGATTG CGGTGGGGAT ATCTGAAATT ACCGCCATTG GCGTCTATGT TCAGTTTTGG
TTCCCAGAAA TCCCGCAGTG GCTGCCGGCT ATCGCTGGGG TGGCGATTGT GGCATTAGCG
AATCTGGCTG CGGTCAAATT GTATGGCGAG CTAGAGTTTT GGTTTGCCAT GATCAAGGTC
ACGACGATCA TTGTGATGAT TTTGGTTGGC TTAGGCGTGA TATTTTTTGG CTTCGGTAAT
CACGGCCAGC CGATTGGCTT CGATAATCTG ACCGCCCATG GCGGTTTCTT TGCCGGGGGG
TGGAAAGGCT TCCTGTTTGC GCTGTGTATT GTGGTCGCGT CTTACCAAGG TGTTGAACTG
GTCGGTATTA CGGCGGGAGA AGCCAGAAAT CCACAGGTGA CGTTAAGAAG AGCGATCAAC
AACATCTTAT GGCGAATTTT GATTTTCTAC GTCGGTGCAA TATTTGTCAT TGTCACCATT
TTTCCCTGGA ATGGGATTGG TACAGAGGGT AGCCCCTTCG TACTGACCTT CGCCAAAATA
GGAATAGTGG CCGCGGCGGG TATTATTAAC TTCGTGATAC TGACCGCCGC TCTCTCAGGT
TGTAACAGTG GTATGTATAG CGGCGGGCGT ATGTTGTATG CCTTGGCAAA AAATCGTCAG
CTACCGGCCG GCCTGACCAA ACTGTCGGCT AGCGGTGTAC CGGTGTACTG CATTGCGATC
ACCATCCTGT GTCTACTGGT GGGGTCGAGC CTGAATTACA TTATTCCCAA CCCGCAGCAA
GTGTTTGTTT ATGTCTACAG TGCCAGCGTG TTACCTGGCA TGGTGCCGTG GTTTGTGGTC
TTGGTCTGTC AGTTACGTTT TCGGCAGGTA CATAAAGCTG CCCTACAGCA GCACCCGTTT
AAATCTATCC TATTCCCCTA TGTGAACTAC CTCACCATCG CATTCCTGAT TTGTGTATTA
GTGGGAATGG GGATAAACCC AGATACTCGC TTATCATTAC TGGTTGGGGC AATTTTTCTG
GCATTAGTGA CGGGATGCTA TTTTGTGCTG GGGATGCATA AACCCAAGGC CATGGAAGCG
GAACGCCTAT AA
 
Protein sequence
MADNAEKKGL HRGLEARHIE LIALGGTIGV GLFMGSASTL KWAGPSVLLA YIIAGLFVFF 
IMRAMGEMLY LEPVAGSFAV YAHKYLSPYF GYLTAWGYWF MWIAVGISEI TAIGVYVQFW
FPEIPQWLPA IAGVAIVALA NLAAVKLYGE LEFWFAMIKV TTIIVMILVG LGVIFFGFGN
HGQPIGFDNL TAHGGFFAGG WKGFLFALCI VVASYQGVEL VGITAGEARN PQVTLRRAIN
NILWRILIFY VGAIFVIVTI FPWNGIGTEG SPFVLTFAKI GIVAAAGIIN FVILTAALSG
CNSGMYSGGR MLYALAKNRQ LPAGLTKLSA SGVPVYCIAI TILCLLVGSS LNYIIPNPQQ
VFVYVYSASV LPGMVPWFVV LVCQLRFRQV HKAALQQHPF KSILFPYVNY LTIAFLICVL
VGMGINPDTR LSLLVGAIFL ALVTGCYFVL GMHKPKAMEA ERL