| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YPK_3998 |
|---|
| Symbol | |
|---|
| ID | 6088639 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Yersinia pseudotuberculosis YPIII |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010465 |
|---|
| Strand | - |
|---|
| Start bp | 4409288 |
|---|
| End bp | 4411081 |
|---|
| Gene Length | 1794 bp |
|---|
| Protein Length | 597 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 641599092 |
|---|
| Product | ATP-dependent DNA helicase RecQ |
|---|
| Protein accession | YP_001722714 |
|---|
| Protein GI | 170026209 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0514] Superfamily II DNA helicase |
|---|
| TIGRFAM ID | [TIGR00614] ATP-dependent DNA helicase, RecQ family
[TIGR01389] ATP-dependent DNA helicase RecQ |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.0373347 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGCAGGTAT TGCGAGATAC TTTTGGTTAT CAGCAATTTC GGCCAGGGCA GCAGGAGATC
ATCAACGCGA CATTGTCAGG CCAGGATTGT CTGGTTGTGA TGCCAACTGG CGGCGGTAAG
TCCTTGTGTT ATCAGATCCC TGCCTTGGTG ACCGATGGGC TGACATTGGT GGTTTCACCG
CTTATCTCTC TGATGAAAGA TCAGGTTGAC CAACTGTTGG CCTATGGCGT GGGCGCGGGT
TGTCTAAACT CATCGCAGAC CCGTGAACAG CAACTGGCCG TTATGGATGG TTGCCGCAGT
GGGCAGATTA AATTGCTGTA TATCGCGCCA GAACGGTTGG TGATGGAGAG TTTTCTTGAT
CAACTGTATC AATGGCGACC CGCCTTGCTG GCAGTGGATG AGGCTCACTG TATTTCCCAA
TGGGGGCATG ATTTCCGCCC GGAATACCGT GCTCTTGGTC AGTTAAAGCA GCGTTTCCCT
GATCTACCGG TTATTGCATT GACCGCTACG GCTGATGAAG CGACGCGTGG CGATATTGTG
CGCCTGTTGA ATCTGGATCA ACCTCTGATT CAGATCAGTA GTTTTGATCG CCCGAATATC
CGCTATACCT TAGTTGAGAA GTTTAAACCT CTCGATCAAC TGTGGCGTTT TGTACAAGAC
CAGCGCGGCA AGAGCGGCAT TATTTACTGT AATAGCCGAG CGAAAGTGGA AGATACGACC
GCCCGTTTGC AAAGCCGTGG CTTGAGTGTT GCCGCCTATC ACGCCGGGCT GGATAACGAG
CGCCGTGCTC AGGTGCAAGA GGCTTTCCAG CGCGATGACT TACAAGTGGT GGTCGCCACC
GTAGCGTTTG GAATGGGGAT TAACAAACCG AACGTCCGCT TTGTCGTGCA TTTTGATATC
CCACGCACCA TCGAATCCTA CTATCAGGAA ACGGGGCGCG CCGGGCGTGA TGGCTTACCG
GCTGAGGCCG TGTTGTTGTA CGATCCGGCA GATATGGCGT GGTTACGCCG TTGTCTTGAA
GAGAAACCTG CGGGTGCTCA GCAAGATATC GAACGGCATA AACTCAATGC GATGGGGGCA
TTTGCCGAAG CGCAAACCTG TCGCCGTTTG GTGCTGCTCA ACTATTTTGG TGAAGGTAAA
CAGCAGCCAT GCGGTAACTG CGATATTTGT CTGGATCCGC CAAAGCGCTA CGATGGTCTG
GCAGATGCGC AAAAGGCGCT CTCTTGCGTC TATCGGGTAG GGCAACGCTT TGGCTTAGGG
TACATCGTTG AGGTGCTGCG TGGGGCGAAT AACCAGCGTA TTCGTGAGAT GGGCCATGAC
AAGCTTTCGG TGTACGGTAT TGGCCGTGAG CAAACCCATG AACACTGGGT CAGCGTCTTG
CGCCAGTTGA TCCATTTGGG GCTGCTCAGC CAGAATATTG CCCAGTTCTC TGCCTTGCAA
CTGACTGAAG CGGCGCGCCC GGTCTTACGC GCAGAGCTGC CATTACAACT GGCGGTACCG
CGTATTCAGA GTCTGAAAGT GCGTAGCAGT GCCAATCAGA AATCCTATGG TGGCAATTAT
GATCGCAAGT TGTTCGCTAA GCTGCGCAAA CTGCGTAAAT CAATTGCTGA TGAAGGCAAT
ATCCCGCCTT ATGTGGTGTT TAACGATGCG ACCTTGCTGG AGATGGCTGA GCAGATGCCG
ATTACTGCCA GCGAGCTATT GAGCGTTAAT GGTGTCGGTC AGCGTAAACT AGAACGTTTT
GGTGCACCAT TTATGGCCCT GATCCGTGAT CATGTGGATA ACAACGATGA CTAA
|
|---|
| Protein sequence | MQVLRDTFGY QQFRPGQQEI INATLSGQDC LVVMPTGGGK SLCYQIPALV TDGLTLVVSP
LISLMKDQVD QLLAYGVGAG CLNSSQTREQ QLAVMDGCRS GQIKLLYIAP ERLVMESFLD
QLYQWRPALL AVDEAHCISQ WGHDFRPEYR ALGQLKQRFP DLPVIALTAT ADEATRGDIV
RLLNLDQPLI QISSFDRPNI RYTLVEKFKP LDQLWRFVQD QRGKSGIIYC NSRAKVEDTT
ARLQSRGLSV AAYHAGLDNE RRAQVQEAFQ RDDLQVVVAT VAFGMGINKP NVRFVVHFDI
PRTIESYYQE TGRAGRDGLP AEAVLLYDPA DMAWLRRCLE EKPAGAQQDI ERHKLNAMGA
FAEAQTCRRL VLLNYFGEGK QQPCGNCDIC LDPPKRYDGL ADAQKALSCV YRVGQRFGLG
YIVEVLRGAN NQRIREMGHD KLSVYGIGRE QTHEHWVSVL RQLIHLGLLS QNIAQFSALQ
LTEAARPVLR AELPLQLAVP RIQSLKVRSS ANQKSYGGNY DRKLFAKLRK LRKSIADEGN
IPPYVVFNDA TLLEMAEQMP ITASELLSVN GVGQRKLERF GAPFMALIRD HVDNNDD
|
|---|
| |