Gene YPK_3996 details

Gene Information

• Locus tag: YPK_3996
• Symbol: rhtB
• ID: 6088456
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Yersinia pseudotuberculosis YPIII
• Kingdom: Bacteria
• Replicon accession: NC_010465
• Strand: +
• Start bp: 4407890
• End bp: 4408510
• Gene Length: 621 bp
• Protein Length: 206 aa
• Translation table: 11
• GC content: 48%
• IMG OID: 641599090
• Product: homoserine/homoserine lactone efflux protein
• Protein accession: YP_001722712
• Protein GI: 170026207
• COG category: [E] Amino acid transport and metabolism
• COG ID: [COG1280] Putative threonine efflux protein
• TIGRFAM ID: [TIGR00949] The Resistance to Homoserine/Threonine (RhtB) Family protein

Plasmid Coverage information

• Num covering plasmid clones: 28
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACCTTAG ACTGGTGGTT AACCTATCTG CTGACAACAT TGATCCTCAG TCTTTCTCCC 
GGCTCGGGGG CCATTAACAC AATGAGCACT GCCATCAGCC ATGGTACCCG TGGGGTTGTT 
GCTTCCATTG GCGGGTTACA ACTGGGTCTG GCGGTGCATA TCGTCTTGGT TGGCGTCGGT 
CTTGGTGCCC TGGTCTCTCA ATCCTTACTG GCATTTGAAA TATTAAAGTG GCTCGGTGCG 
GCTTACTTAA TTTGGCTTGG TATTCAACAA TGGCGTGCAG CCGGGTCGCT TGACCTGCAT 
GCACTGGCAA ACAGTATGCC CAGGCGTAAG CTGTTTAAAC GTGCGGTGTT TGTTAACCTG 
ACCAATCCAA AAAGCATTGT TTTTCTGGCC GCGTTATTTC CACAATTTGT ACTGCCACAG 
CAACCGCAGG TGGCACAGTA TTTGATTTTG GGCAGCACCA GTGTGATTGT CGATATTATC 
GTGATGATTG GTTATGCCAC TTTGGCTACA CGTATTGCCC GTTGGATTAA ATCGCCACAG 
CAAATGAAAC TCTTGAACCG AATATTTGGC GGCCTATTTA TGTTGATTGG TGCATTATTA 
GCCACAGCGC GCAAAGTATA A 

 

Protein sequence

MTLDWWLTYL LTTLILSLSP GSGAINTMST AISHGTRGVV ASIGGLQLGL AVHIVLVGVG 
LGALVSQSLL AFEILKWLGA AYLIWLGIQQ WRAAGSLDLH ALANSMPRRK LFKRAVFVNL 
TNPKSIVFLA ALFPQFVLPQ QPQVAQYLIL GSTSVIVDII VMIGYATLAT RIARWIKSPQ 
QMKLLNRIFG GLFMLIGALL ATARKV