Gene YPK_3980 details

Gene Information

• Locus tag: YPK_3980
• Symbol: rsmD
• ID: 6088184
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Yersinia pseudotuberculosis YPIII
• Kingdom: Bacteria
• Replicon accession: NC_010465
• Strand: +
• Start bp: 4390538
• End bp: 4391200
• Gene Length: 663 bp
• Protein Length: 220 aa
• Translation table: 11
• GC content: 51%
• IMG OID: 641599074
• Product: 16S rRNA m(2)G966-methyltransferase
• Protein accession: YP_001722696
• Protein GI: 170026191
• COG category: [L] Replication, recombination and repair
• COG ID: [COG0742] N6-adenine-specific methylase
• TIGRFAM ID: [TIGR00095] RNA methyltransferase, RsmD family

Plasmid Coverage information

• Num covering plasmid clones: 28
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCAAAGC AACCTATAGC AAAGCGTTCT ATAGTAAAAA AAGCATCACC GCAGTCAGCG 
GGGCAGATAA GAATCATTGG CGGCAAGTGG CGTGGGCGTA AACTCCCCGT TCCAGATAGC 
CCAGGGCTGC GCCCCACGAC GGACCGGGTA AGGGAAACAT TATTTAACTG GCTCGCTCCG 
ATGATTCAGG GTGCTCGCTG TCTGGATTGT TTTGCGGGCA GTGGTGCGTT AGGGCTGGAA 
GCACTATCCC GTTATGCAAG CGAAACTACC TTGCTGGAAG CTGATCGTCA GGTTGCCAAA 
CAACTGAGCG ACAACCTAAC GCTACTAAAA GCTGAAAATG GGCAAGTTGT AAACACCAAC 
TCATTACAAT GGTTGGCGCA ACCGGGGCAG CCTTTCAATT TGGTATTTCT GGATCCGCCT 
TTTCGTAAAG GCCTACTGGC TGAAACCATT AATTTGCTAG AGCAATTTAA CTGGCTGGCT 
GCTGATGCCT GGATCTATGT TGAAGCGGAG GCAGAAAGCG CCGTTGCTGA TGTCCCCGCC 
AATTGGCTGT TACATCGAGA AAAAATCGCC GGGCAGGTTG CCTATCGTTT ATTTATTCGC 
CAACAAACCG ATTTGCCAGC ATGTGCATCG GTGGCAGAGC AGGAGCAACA CCATGTGGAT 
TAA 

 

Protein sequence

MAKQPIAKRS IVKKASPQSA GQIRIIGGKW RGRKLPVPDS PGLRPTTDRV RETLFNWLAP 
MIQGARCLDC FAGSGALGLE ALSRYASETT LLEADRQVAK QLSDNLTLLK AENGQVVNTN 
SLQWLAQPGQ PFNLVFLDPP FRKGLLAETI NLLEQFNWLA ADAWIYVEAE AESAVADVPA 
NWLLHREKIA GQVAYRLFIR QQTDLPACAS VAEQEQHHVD