Gene YPK_3973 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagYPK_3973 
Symbol 
ID6091294 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameYersinia pseudotuberculosis YPIII 
KingdomBacteria 
Replicon accessionNC_010465 
Strand
Start bp4382657 
End bp4383583 
Gene Length927 bp 
Protein Length308 aa 
Translation table11 
GC content50% 
IMG OID641599067 
Productbranched-chain amino acid transporter permease subunit LivH 
Protein accessionYP_001722689 
Protein GI170026184 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0559] Branched-chain amino acid ABC-type transport system, permease components 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value0.883814 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCAGAGC AGTTTTTATA TTTTCTGCAG CAGATGTTCA ACGGTATTAC GTTGGGCAGC 
ACTTATGCGC TGATCGCCAT TGGTTATACC ATGGTGTACG GCATTATCGG CATGATCAAC
TTTGCTCACG GCGAAGTATA TATGATCAGC AGTTACGTCT CATTTATCGT GATCGCCGCA
TTAATGATGG TGGGGATCGA TGCCAGTTGG CTATTGATTG GTTGCGCTTT CCTGGTGTCG
ATTGTGATCG CCAGTACTTA CGGCTGGAGC ATTGAACGGG TAGCCTATAA GCCAGTTCGT
CGCTCTAAGC GCCTGATCGC GCTGATTTCG GCGATCGGCA TGTCTATTTT CCTACAGAAC
TATGTCAGCT TGACGCAAGG TTCACGGGAT TTGGCATTAC CCAGTCTGGT CACCGGGCAG
TGGACCTTAG GTGAGAGTAA TGGCTTTGCT GCGACGATCA GCACCATGCA ACTGACGATT
TGGATTGTCA CCTTCTTGGC CATGTTGGCG CTGACTCTAT TTATCCGTTA TTCACGAATG
GGCCGTGCTT GCCGCGCCTG TGCCGAAGAT TTGAAAATGG CCAGTTTACT GGGCATTAAC
ACTGACCGGG TTATCTCGCT GACTTTTGTG ATTGGCGCAC TGATGGCCGC TGTCGCGGGT
GTGTTACTCG GCCAGTTCTA CGGGGTGATC AATCCCTATA TTGGCTTTAT GGCAGGGATG
AAAGCATTCA CCGCCGCAGT ATTAGGCGGT ATTGGCAGTA TTCCGGGCGC AATGATTGGT
GGTTTGGTTC TCGGTGTGGC TGAAGCACTG ACCTCCGCTT ATCTCAGCAC TGAATACAAA
GATGCGGTTT CATTCGCGCT GCTGATTGTG GTGTTGTTAG TGATGCCTAC CGGGATTTTA
GGCCGTCCGG AGGTTGAAAA AGTATGA
 
Protein sequence
MSEQFLYFLQ QMFNGITLGS TYALIAIGYT MVYGIIGMIN FAHGEVYMIS SYVSFIVIAA 
LMMVGIDASW LLIGCAFLVS IVIASTYGWS IERVAYKPVR RSKRLIALIS AIGMSIFLQN
YVSLTQGSRD LALPSLVTGQ WTLGESNGFA ATISTMQLTI WIVTFLAMLA LTLFIRYSRM
GRACRACAED LKMASLLGIN TDRVISLTFV IGALMAAVAG VLLGQFYGVI NPYIGFMAGM
KAFTAAVLGG IGSIPGAMIG GLVLGVAEAL TSAYLSTEYK DAVSFALLIV VLLVMPTGIL
GRPEVEKV