Gene YPK_3944 details

Gene Information

• Locus tag: YPK_3944
• ID: 6087160
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Yersinia pseudotuberculosis YPIII
• Kingdom: Bacteria
• Replicon accession: NC_010465
• Strand: -
• Start bp: 4350439
• End bp: 4351089
• Gene Length: 651 bp
• Protein Length: 216 aa
• Translation table: 11
• GC content: 46%
• IMG OID: 641599038
• Product: sterol-binding domain-containing protein
• Protein accession: YP_001722660
• Protein GI: 170026155
• COG category: [S] Function unknown
• COG ID: [COG3165] Uncharacterized protein conserved in bacteria

Plasmid Coverage information

• Num covering plasmid clones: 31
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCACTAA GAACACTGAT GCTAAAGCCC TTTTTATTAA AACCAAGGTT ACTGACACCC 
CTAATAACCG CAGCCTTAGA AACGGTTCTC AATGGTGTGT TGTTTAATGA TAAAAGCCTA 
AAAGCTGCCC GTTCACGTTT AGTGGGCAAA GTGTTACGTA TTGAATTACG TGAAATAAAT 
TTCCCATTGC TGTTCGTGTT TAGTGAGCGT CAAGTCGATG TCTTAAGCCA GTGGGATGAT 
GCTGCGGACT GCCTAGTTAA AACGGATGTC GCTGTACTGG CAAGATTACG TGACCGCCAG 
CAACTTTCGC CTTTAATGCG CACGGGTGAA TTGGTGGTTG AAGGTGACAT TCAAGTAGTC 
CAGCAACTTG TCGCGTTATT AGATCTTGCT GAGTGGGATC TTGCGGAATG GTTGGCACCT 
TATGTGGGTG ATGTTGCTGC TGAAAGTCTG GGGCAAGCTA TTCACAAAAG TAGCGGTTTT 
CTTAGTAGGC AATTACGGCA ACAGCAGCAT TATTTGGCTG AAGCTATCAC CGAGGAGTGG 
CGAATGGCTC CCAACCTGCT GGAAGTCATG TGGTTTCATG AAGAAGTCGA TGCAACCGCT 
CGTGCAACCG AAGCTTTGAG TTCCAGATTG GCAACTATGG AGACAAAATA A 

 

Protein sequence

MSLRTLMLKP FLLKPRLLTP LITAALETVL NGVLFNDKSL KAARSRLVGK VLRIELREIN 
FPLLFVFSER QVDVLSQWDD AADCLVKTDV AVLARLRDRQ QLSPLMRTGE LVVEGDIQVV 
QQLVALLDLA EWDLAEWLAP YVGDVAAESL GQAIHKSSGF LSRQLRQQQH YLAEAITEEW 
RMAPNLLEVM WFHEEVDATA RATEALSSRL ATMETK