| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YPK_3910 |
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| Symbol | |
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| ID | 6088260 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Yersinia pseudotuberculosis YPIII |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010465 |
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| Strand | - |
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| Start bp | 4309882 |
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| End bp | 4310613 |
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| Gene Length | 732 bp |
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| Protein Length | 243 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 641599002 |
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| Product | YscJ/HrcJ family type III secretion apparatus lipoprotein |
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| Protein accession | YP_001722628 |
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| Protein GI | 170026123 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4669] Type III secretory pathway, lipoprotein EscJ |
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| TIGRFAM ID | [TIGR02544] type III secretion apparatus lipoprotein, YscJ/HrcJ family |
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Plasmid Coverage information |
| Num covering plasmid clones | 39 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAAATCTC TGCGGCAGAT GTTAGCGATA GTCCTAATGA CATTATCCCT TTCCGGTTGT
GATATGGAGC TGTATAGCGG GCTGTCTGAG GGGGAGGCCA ATCAAATGCT GGCATTGCTG
ATGCTGCACC AAATTAACGC CGAAAAACAG ATCGAAAAGA GCGGGATGGT GGGGCTAACG
GTCGATAAGC GGCAATTTAT TAATGCCGTT GAGTTGCTAC GACAGAATGG TTTCCCCCGA
CAGCGTTTTA TCACGGTGGA TGAGCTGTTT CCTGCTAACC AGTTAGTGAC CTCTCCCACG
CAAGAGCAGG CCAAGATGGT TTTTCTGAAA GAACAGCAGT TGGAAAACAT GTTGAGCCAT
ATGGATGGGG TGATTCATGC CGATGTCACG GTGGCAATGC CTATGTCGGT TGACGGGAAA
AACCCGCTTC CGCATACCGC CTCGGTGTTT ATCAAGTATT CGCCGGAAGT CAATTTACAA
AGCTATCAGT CGCAAATCAA AGGGTTGGTC CGCGATGCGG TTCCCGGTAT TGATTACGCC
AAGATAAGCG TGGTGATGCA GCCTGCGAAC TACCGTTTCA GTGCCTCAGA GGCAGAGCAA
CAACAGGGGC CACAAACCAC GGTGCAATGG TTATTACGCC ATGTAGGAAT GGTGCAGAAC
ATGGTGGGAG TGGCGTTTAT CTCACTTATT GTATTGATGT TTGTAGGCTG GTTTTATTCT
CGGCGTCGGT AA
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| Protein sequence | MKSLRQMLAI VLMTLSLSGC DMELYSGLSE GEANQMLALL MLHQINAEKQ IEKSGMVGLT
VDKRQFINAV ELLRQNGFPR QRFITVDELF PANQLVTSPT QEQAKMVFLK EQQLENMLSH
MDGVIHADVT VAMPMSVDGK NPLPHTASVF IKYSPEVNLQ SYQSQIKGLV RDAVPGIDYA
KISVVMQPAN YRFSASEAEQ QQGPQTTVQW LLRHVGMVQN MVGVAFISLI VLMFVGWFYS
RRR
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