| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YPK_3903 |
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| Symbol | |
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| ID | 6089793 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Yersinia pseudotuberculosis YPIII |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010465 |
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| Strand | - |
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| Start bp | 4303368 |
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| End bp | 4304330 |
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| Gene Length | 963 bp |
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| Protein Length | 320 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 641598995 |
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| Product | type III secretion system protein |
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| Protein accession | YP_001722621 |
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| Protein GI | 170026116 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1886] Flagellar motor switch/type III secretory pathway protein |
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| TIGRFAM ID | [TIGR02551] type III secretion system apparatus protein YscQ/HrcQ |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.180984 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGCTGACGA ATCTGACGCC TGAGTTACTC GCCCTCAGCA CCTTGATCGG GAGTGGCCGG
CAGACAGCAG GGGTGTCGGT GGCCTTGACG GAGATTGACG GTGAGGGCGT TTATCTGCCA
CTGCACTATG GCGGCCAAGA GTGTGGGTTG TGGTTATCAC AATCCTGTTG GCAGCACTGG
TTGAACACGA CGTTGGCAAC CGATAACCCC CAGTTGTTGG CCGCAGAGTT AGTGATCGCC
ATGGCTAATT GGGCCGTCAC CCCATTGTTA GCGCCGTTTA CCGATCTGGT GGTATTGGCC
GAGTCACCAC AGAAGAGGTC ACTGCCAAAG CAGTGGGCGG TGACGGTGGC TTTCGAGCTG
GAGGGACAGC CGATTATCGG TGTGTTACAG GATTGGCCGC AGGCGGTATT GGCCGACACT
TTGTCTCATT GGCCGTGCGA AGCGGTCACC GCCCCTGATT TGCTTTGGCA ATCTGGATTG
GTGGCGGGTT GGTGCCACTT ATCATTGCGT CAATTACAGC AGTTAAGGCC GGGCGAGGGT
TTACGCCTCT CTATGGCGGC GGAATTGGAT AAAGAAGCGT GCTGGTTATG GCATCACGCA
TCGCCACAAA TTTATATCAA GCTAGAGGGT GGGAACAGAA TGACAATTCA ACAGATTAAT
GAAGCGAGTG ACCCGCTGGC CTGCGGCAGT CGCGCTGAAT CACTGCCTTT GGCGGCGGTA
CAATTTGAGG ATTTACCGCA AACGCTGGTG ATGGAAATTG GCCGTTTGAC CTTGCCTCTG
GGGGAGATAA AACAACTCGC GGTTGGTCAG ACGCTGGCGT GCCAAACCCA CTGTTATGGC
GAGGTGAATA TCTGCCTGAA TGGGCAATCC GTTGGCCGTG GCAGTTTACT CCGGTGCGAT
GAACAACTGG TGGTCAGAAT TGCACAATGG GGATTACAAA ACGGCGAAAA TATCATGGAA
TGA
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| Protein sequence | MLTNLTPELL ALSTLIGSGR QTAGVSVALT EIDGEGVYLP LHYGGQECGL WLSQSCWQHW
LNTTLATDNP QLLAAELVIA MANWAVTPLL APFTDLVVLA ESPQKRSLPK QWAVTVAFEL
EGQPIIGVLQ DWPQAVLADT LSHWPCEAVT APDLLWQSGL VAGWCHLSLR QLQQLRPGEG
LRLSMAAELD KEACWLWHHA SPQIYIKLEG GNRMTIQQIN EASDPLACGS RAESLPLAAV
QFEDLPQTLV MEIGRLTLPL GEIKQLAVGQ TLACQTHCYG EVNICLNGQS VGRGSLLRCD
EQLVVRIAQW GLQNGENIME
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