| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YPK_3902 |
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| Symbol | |
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| ID | 6089788 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Yersinia pseudotuberculosis YPIII |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010465 |
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| Strand | - |
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| Start bp | 4302591 |
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| End bp | 4303301 |
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| Gene Length | 711 bp |
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| Protein Length | 236 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 641598994 |
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| Product | type III secretion system protein |
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| Protein accession | YP_001722620 |
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| Protein GI | 170026115 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4790] Type III secretory pathway, component EscR |
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| TIGRFAM ID | [TIGR01102] type III secretion apparatus protein, YscR/HrcR family |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.161031 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGAAACA GCTTACTTTT TATTTTATCT GAAACAGATG ACTTATATGA AACAGATCAC
ATGGAATTAC TGAATTCATC CTATCAATTG ATCGCCCTGC TTTTCATGCT GTCCGTGTTG
CCTTTACTGG TGGTCATGGG GACCGCATTC CTTAAGCTAT CCGTGGTTTT TTCGTTGTTA
CGCAATGCGC TGGGTGTTCA ACAAGTGCCA CCGAATATTG CCATTTACGG GCTGGCGCTG
GTGCTGACTA TTTTTATCAT GGCACCGGTT GGTTTAGATG TTCAGGCGCG CTTGCAAAAT
GAAGAGCTGT CCAATGACAT CGGCGCATTA GCGCACCAAA TTGATCAAAA TGCGCTGGTG
CCCTACCGCG ATTTTTTACA GCGCAATACC GATATTGAGC AAGTCACTTT TTTTAACGAC
ATTGTGCAGA ATAAGTGGCC TGAGCGTTAC CGCGATAGCG TCAAACCCGA TTCACTGCTG
ATATTAATGC CCGCCTTTAC CCTCAGTCAG CTTAATGAAG CGTTTAAAAT CGGCCTGTTA
CTTTTTTTAC CGTTTGTCGC CATCGATTTA ATTGTATCCA ACATTTTGCT GGCGATGGGC
ATGATGATGG TGTCACCCAT GACCCTGTCA TTGCCGTTTA AACTGTTGGT TTTCGTCCTG
GTGGATGGCT GGTCATTGGT TCTCGGACAG CTTGTAGGTT CCTATTTATG A
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| Protein sequence | MRNSLLFILS ETDDLYETDH MELLNSSYQL IALLFMLSVL PLLVVMGTAF LKLSVVFSLL
RNALGVQQVP PNIAIYGLAL VLTIFIMAPV GLDVQARLQN EELSNDIGAL AHQIDQNALV
PYRDFLQRNT DIEQVTFFND IVQNKWPERY RDSVKPDSLL ILMPAFTLSQ LNEAFKIGLL
LFLPFVAIDL IVSNILLAMG MMMVSPMTLS LPFKLLVFVL VDGWSLVLGQ LVGSYL
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