Gene YPK_3887 details

Gene Information

• Locus tag: YPK_3887
• ID: 6091138
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Yersinia pseudotuberculosis YPIII
• Kingdom: Bacteria
• Replicon accession: NC_010465
• Strand: +
• Start bp: 4287826
• End bp: 4288476
• Gene Length: 651 bp
• Protein Length: 216 aa
• Translation table: 11
• GC content: 53%
• IMG OID: 641598979
• Product: NmrA family protein
• Protein accession: YP_001722605
• Protein GI: 170026100
• COG category: [G] Carbohydrate transport and metabolism; [M] Cell wall/membrane/envelope biogenesis
• COG ID: [COG0702] Predicted nucleoside-diphosphate-sugar epimerases

Plasmid Coverage information

• Num covering plasmid clones: 12
• Plasmid unclonability p-value: 0.00312575
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGGCCAT GGTTGATATT TGGTGCAGGT CGTGGCGTAG GCGCACATCT GCTAGCGTTA 
GCAAATCAAC ATGCGGATTC TGCCTCGAAT CCTCGTCCTG TCACCTTGTT GATCCGTAAT 
CAGCAGCAAG CAGAGGAATT GCGCAACAAA GGTCTGACCG TGGTCTGCGG TGATGCTTGT 
GATCCGGCCA GTGTGCGCGA AGCCTGCCAA CTAGCCGGTG AGGACGCCGC TATCATTTCG 
ACGCTGGGTA ATAACAATGC GAACTATCAG GGTAATCGGC TGATCATTGA CACGGCTGAG 
CAACTGGGGC TGAAGCGTAT GCTTTTGGTT ACATCGATCG GTTGTGGCGA TAGTTGGCCA 
ACCCTCTCCC CTGCCGCCCG CGCAGCTTTT GGTCAGGCAG TGCGTGAGAA ATCACTGGCC 
GAGAGTTGGT TACAAACCAG CAACCTGATT TATACCCTGA TTCGGCCGGG TGGCCTATTG 
GATCAGCCCG CCACCGGTAA CGCAATACGC CTGCAAACAG AAGCCCATGG CATGGTCACG 
CGTGCAGATG TCGCACACCA TATAAGTCAG ATGATCGAGG ACCCCGCGAC ATATTATCAA 
GCTTATGCAT TAATTGAGCC AGGATTAGCC CGTAAGGTAA AAATGAATTA A 

 

Protein sequence

MRPWLIFGAG RGVGAHLLAL ANQHADSASN PRPVTLLIRN QQQAEELRNK GLTVVCGDAC 
DPASVREACQ LAGEDAAIIS TLGNNNANYQ GNRLIIDTAE QLGLKRMLLV TSIGCGDSWP 
TLSPAARAAF GQAVREKSLA ESWLQTSNLI YTLIRPGGLL DQPATGNAIR LQTEAHGMVT 
RADVAHHISQ MIEDPATYYQ AYALIEPGLA RKVKMN