| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YPK_3885 |
|---|
| Symbol | |
|---|
| ID | 6090526 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Yersinia pseudotuberculosis YPIII |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010465 |
|---|
| Strand | + |
|---|
| Start bp | 4285919 |
|---|
| End bp | 4287232 |
|---|
| Gene Length | 1314 bp |
|---|
| Protein Length | 437 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 641598977 |
|---|
| Product | coproporphyrinogen III oxidase |
|---|
| Protein accession | YP_001722603 |
|---|
| Protein GI | 170026098 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0635] Coproporphyrinogen III oxidase and related Fe-S oxidoreductases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATATTG ATCTGATGCC GTATTATGCC CAACCAGGGC CACTGCCATT TCCCAAACGT
TGGGCTACGA TGCCGTGGCG TGACAGCCGG CCATTACCCG CAGAGTCACT CCAGGATAGC
TGGCAGTCAC TATTACAAAA AGCGCTTCCT CGCAATAAGC GTTTACTTTA CTTACACATT
CCATTCTGTG CTACCCACTG TACTTTCTGT GGTTTCTACC AAAACCCGCT GCAATCCGGT
AGCACCGAAC GCTATACCGA TTACCTCTTG CGAGAGCTGA GCATGGAAGC CGATAGCCCA
CTGCTACAAG GGGGGCCAAT TCATGCGATC TACTTCGGTG GCGGTACACC AAGTGCACTT
TCCGCACAAC AATTACACAG TATTATCAGC CAATTACGCA AGAGTTTACC GCTAGCTCCC
GATTGTGAGA TCACCGTTGA AGGGCGAATT TTTAATTTTG ATGATGAGAG AATTGATGCC
TGTCTGGAAG CAGGGGCTAA CCGTTTCTCT ATCGGGGTTC AAACGTTTAA CACCCGCATT
CGTCAACGAA TGGGCCGCAA AGCTGACCGC GATCAGGCGA TTCGTTTTCT GACTGATTTG
GCGACCCGTG ATCGGGCTGC TGTTGTTTGT GATCTAATGT TCGGTTTACC GCATCAAACT
CCCGAAATCT GGCAGGAAGA TTTAGCCATC GTGCGTCAGC TCCCGCTGGA TGGGGTTGAT
CTATATGCTC TCAATTTGTT GCCGACCACA CCGCTGGCTA AATCGGTAGA AAATAACCGG
GTAGAACTGC CGACACTGGC ACAACAATGC GACTTTTACT GCAGCGGGGC AGATAGCCTC
GCACAGGCGG GTTGGCATCA GTTAAGCAAC AGCCACTGGG CGCGGACCAC CCGTGAGCGC
AATCTGTATA ACCTGTTAAT CAAGCAAGGG GCCGATTGCC TCGCATTGGG CAGTGGTGCA
GGGGGCTCCT TGCAAGGGCA CGCTTACATG CAGCACCGTA GTCTGGATAA CTACTATCGG
TTAATCGATA GTGGGCAGAA ACCGTTAATG ATGATGACGC AAGCCAGCGG CGAACATCCG
TGGCGGGCTA AATTACAAAG TGGTATTGAA GTTGGGCGTC TGGACCTGAG CGAGTTAATT
GCCGATCCGT ACCCTCTCAT GCCATTGATA TCCCAGTGGT ATCAAAGCAA TCTACTGAAA
GATAACAGTT TCTGCCTGCG CCTAACCGAC AGCGGGCGTT TTTGGGCCAG CAATATCATG
CAGGCACTGC AAAATATTAT TCCTTCACTC ATCACAGCGG AAAGCCACTC ATGA
|
|---|
| Protein sequence | MNIDLMPYYA QPGPLPFPKR WATMPWRDSR PLPAESLQDS WQSLLQKALP RNKRLLYLHI
PFCATHCTFC GFYQNPLQSG STERYTDYLL RELSMEADSP LLQGGPIHAI YFGGGTPSAL
SAQQLHSIIS QLRKSLPLAP DCEITVEGRI FNFDDERIDA CLEAGANRFS IGVQTFNTRI
RQRMGRKADR DQAIRFLTDL ATRDRAAVVC DLMFGLPHQT PEIWQEDLAI VRQLPLDGVD
LYALNLLPTT PLAKSVENNR VELPTLAQQC DFYCSGADSL AQAGWHQLSN SHWARTTRER
NLYNLLIKQG ADCLALGSGA GGSLQGHAYM QHRSLDNYYR LIDSGQKPLM MMTQASGEHP
WRAKLQSGIE VGRLDLSELI ADPYPLMPLI SQWYQSNLLK DNSFCLRLTD SGRFWASNIM
QALQNIIPSL ITAESHS
|
|---|
| |