| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YPK_3866 |
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| Symbol | |
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| ID | 6090068 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Yersinia pseudotuberculosis YPIII |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010465 |
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| Strand | - |
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| Start bp | 4262897 |
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| End bp | 4264954 |
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| Gene Length | 2058 bp |
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| Protein Length | 685 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 641598958 |
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| Product | berberine/berberine domain-containing protein |
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| Protein accession | YP_001722584 |
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| Protein GI | 170026079 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG3979] Uncharacterized protein contain chitin-binding domain type 3 |
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| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGATTA TTGATAAAAA TGTCAGTACC TATGAAACGT TACAAAAGGG TTTTAATTTA
CGTTGGCCAC CCAACGTTGA GCAGGGTGCT GAGACCATTT ATATCTGCAC GACACCCGAT
GAAGTTTTTG CCGCCGCCAA TACTGCGCTA GCTGCAGGAA ATCGAATCAC GGTACGGAGT
GGGGGGCACT GTTATGAGGG TTTTGTTTCC AACAAGTTAT CTACAGAGAG ATTGTCGATC
ATTGATTTAG GCGAGATGAG CGGCCTGGAC TACGATGAAG ACAAAACGAT AACCTCACTT
TGGGACGCGA ATAAAAATAC TTATCGCTTC AAGAGTCTGA CGGGGAATCA GAATTGGAAT
GGCTATGTCT CACTCTACAA ACGGTCTGGC CGGACGATCC CCGGCGGGTC ATGTTACTCC
GTGGGCGTGG GTGGGCACAT CAGCGGCGGT GGCTATGGAT TACTCTCACG TCTGCATGGG
TTAACAGTGG ATTGGGTCAC TGGTGTTGAT ATTTTGGTGC CGGTCGGGAA CGCGCATCGG
CTGGCATTTC GACATGTGCG CGCTGATAGT GTGTCTGAGG TAGACAGAGA GCTATTCATG
GCTTGCTGTG GCGCTGGCGG TGGGAATTTC GGCATCATTA TCGCCTATTA TTTCGATGAT
CTTCCCAAAG CACCTCAGAA AGCCTATTGG ATACCCCTAA CGTACCCATG GTCATCTTTA
AAAGCGACAT TCCCCGCCTT TTTAAAAGCT TATTGGCAAT GGTTTGCTGA CAATGATGTT
AATGCGACCA GTACGAAGGA GGGCGTCGGT AATGGCGGGT TATTTACTTT ACTGAAATTA
AACCATATCG ATGCGTCCGA TAATGTCGTG TTGGCCATTC AATACACGGG TCCAAATGGT
CAAGTCGGGG GCGCGAATGA TATTCCTCTC AATGACTTTA TCGAAAAAAT GAATGCCGCG
GCTGGCATGA CACCGACGAT ATATGATGAT TTTATTTTGC CAAACATCCC GCCGTTTAAG
CACTTGTACC CAGGTCGAAA AATCGGGCGT ACTGTGGATG AAAGTGCCTC CATGGATTGG
TTGCATGTGA CTCAAATGAT CAATGGGTCA GGCAGTAATC AGCGTGGAAA ATATAAATCT
GACTACCAAA TCAAGCAGTT TTCAGACGAG ATGTGCCATG CCTTGCTGAC ACACTTGACT
ACCGCCACAG CTGATAAGCG TTTCAATCAG TCGCTGGTAC AAATTGATTC CTATGGTGGG
GCGATCAACA GCCGTGGCAT CGGGGCAACA GCTGTGTCTC AAAGGAACTC GCTGCTCAAA
GCGCAATACC AGACTTATTG GACGAATGAA GCCGATGACC AGACGCACTT AACATGGATC
CGCAATATTT ATGCGGCAGT GCATAATGGC AAACCTGCTC CTCCTGAGTT CGAGGGATGC
TATATCAATT ATCCCGATAT CGACATGAAA TACACCGATT CAGGTGAGGA AGATCCAAAT
TGGTTGAATC TGTACTATGG CTGGGATACG CAATTGATCA AGAGGTTGAT TGCGCTAAAA
GCGAGAATCG ATCCTAACAA TATTTTTCAC CATGAACTGT CTATCCCATT AGTGACAGAA
TTACCTAAAG CCCCGGTTAA TCTCCACAGC ACGGGGCAAA CGACAACCAG TATTAGTCTC
ATGTGGGGGA GCTCGATAGG GGCATTACCT GTTGCCAGCT ATGCCATTTA CCGCGATGGT
CATGAAGTGA AACTTCTGAA CGGAACCCAG ACTTCAGCAG AAGATGCCGG TTTGCAACCA
AATACGGAGT ACCGCTATTT TGTTGCCGCA GGCGATGAAC ATGGCAACCT GTCAGTGCCC
AGCAATGTAC TGACGGTGAG CACCCAAGGC ACACACCCGG CATGGGTACT GAATGGGAGT
TACGCTGTTG GTGATGTGGT AAGCAATCTG GGTAAACTCT GGCGCTGTAT TCAGTCGCAC
GTAGCCTATG ATCCATTATG GGCTCCGGGG ACTAACGGTG GTATTACGCT ATGGGCGGGG
TATACCGCAG GTCGTTAA
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| Protein sequence | MKIIDKNVST YETLQKGFNL RWPPNVEQGA ETIYICTTPD EVFAAANTAL AAGNRITVRS
GGHCYEGFVS NKLSTERLSI IDLGEMSGLD YDEDKTITSL WDANKNTYRF KSLTGNQNWN
GYVSLYKRSG RTIPGGSCYS VGVGGHISGG GYGLLSRLHG LTVDWVTGVD ILVPVGNAHR
LAFRHVRADS VSEVDRELFM ACCGAGGGNF GIIIAYYFDD LPKAPQKAYW IPLTYPWSSL
KATFPAFLKA YWQWFADNDV NATSTKEGVG NGGLFTLLKL NHIDASDNVV LAIQYTGPNG
QVGGANDIPL NDFIEKMNAA AGMTPTIYDD FILPNIPPFK HLYPGRKIGR TVDESASMDW
LHVTQMINGS GSNQRGKYKS DYQIKQFSDE MCHALLTHLT TATADKRFNQ SLVQIDSYGG
AINSRGIGAT AVSQRNSLLK AQYQTYWTNE ADDQTHLTWI RNIYAAVHNG KPAPPEFEGC
YINYPDIDMK YTDSGEEDPN WLNLYYGWDT QLIKRLIALK ARIDPNNIFH HELSIPLVTE
LPKAPVNLHS TGQTTTSISL MWGSSIGALP VASYAIYRDG HEVKLLNGTQ TSAEDAGLQP
NTEYRYFVAA GDEHGNLSVP SNVLTVSTQG THPAWVLNGS YAVGDVVSNL GKLWRCIQSH
VAYDPLWAPG TNGGITLWAG YTAGR
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