| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YPK_3865 |
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| Symbol | |
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| ID | 6090870 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Yersinia pseudotuberculosis YPIII |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010465 |
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| Strand | + |
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| Start bp | 4258744 |
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| End bp | 4262553 |
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| Gene Length | 3810 bp |
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| Protein Length | 1269 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 641598957 |
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| Product | outer membrane autotransporter |
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| Protein accession | YP_001722583 |
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| Protein GI | 170026078 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3468] Type V secretory pathway, adhesin AidA |
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| TIGRFAM ID | [TIGR01414] outer membrane autotransporter barrel domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCATATAC AATTCAGAGA GCCTATTTCT ACCTCACCCG CTCAACCGGA TGCAGGGCGT
CAACACCTCT TCAGCCGTGT TCCTGCAGCC GTGATGAATC CGACTACATT GGCAATTATT
GTTGCGTTCT CCACCCTCGT CTTACCACAA ACCGCATGGG CGGCGTGCAA TAGCTCGGGG
GTGGGAACCT ATGTTTGCGA AGGTGAAAAT AACACCGCGA TATCCCTGTT CGGCACGGAT
ATCGCCGTTG AGACCCGGCC AGGTTTTGGC ATAACAGAAC ATGAAATTAC GGATTCTGCG
CTCTCGTTAA CCGGTTCGGG TACCATCAGT TACCTCGATA CCAACAGTTC TGCACTGGAT
ACCGACAGTC GATATTCTTT GTATATTAAG AATGACACAT TAATAACCGA GCAATCGGCA
TCCATTAATG TTCAGAGCAA CGGCTCCATT AGCAGTGGCG TTTACATTGA CAACCAGAGC
AGTGACGATT CGACCATACG GGTAGATCTC TCTGGCATCT TATCCAGCAG CCTGAGCGGC
GCTCCAGCTC TTTCAATCTT TTCATCGGCA GGCAATGATT CAACTATCAT TCTGAACACC
CACGCTATTT CAGGTGTTAC TGGCATCCAA AGCGATAATA ATTCACAAAA TGGAGCGACC
ATCACCCACG TTGATGTTAC TGGTGATATT AACGTCGAAA ATTCAGGCGT CTCGATCCGA
AATGCTGCCA ATGGTGGCAC CAGCATAATT AACTTCAATT CAAAGAGTAT TAATACAGAA
TATGACAGTT TTTATATTCA AAATACCAAT TATGTAGGTG GAGTGATAAC TGATATCAAT
ATTGATGGCG ATATCAGTTC AGCTAATAGT CAAGCAGCCA GGATTTACAA TTATACCAAT
GGCGGTCTTG CGAGCCTTAG ATTTCGCGCA AATAATGTCA CTGGATCGAC TGGCCTTTAT
ATCGATAATA GCAGCCAAAA TGGCGCTGTA ACCGATATTA TATTGACGGG TGATCTTACG
GCTACTTCAG GATCTGCTCT ACAAGCCAAT GCCTACTCGG ATGAGGGAAA CATCGAGACC
GCTATCAAGT TGAATAACGT TTATTCTTTG TATGATGCAC TCAATATTAG CGACTATACC
CGATCCGGAA ATATACTGCA TGACCTTGAT ATTTCAGGAA CGATTACTGC AGAAAACGGT
ACCGGAATTA AAGTGATGGG CGCGGCTGGT GAAGGCAGTT CTACTATGCT CATCAATGTG
AATAATATTA CTTCCAGCAG TCAATCGCTT GATATCAACA ATTACAATTT TTTGGGTTCA
GCTTTTTCTG CCATTACCGC GACCGGGCAT CTCACGGCGG AATGGGGACA AGGGGCAATG
CTCCAGACCC ATTCCTCTCT GGGGGATGCC ACCACGCTCA TCCACTTCAA TGACATCACT
GCAATGAGCA GTGGAATATC TCTCATTAAC GAAGCTAACC AAGGTACTTC AACCACCGAT
ATCACCGTGA CGGGCCAGAT TAACGTCAGC CACGGAGAGG GGATTACCCT TAATGCACTG
ACCACTGATG GCCGCACTTT GGTCAACGTT GACGTCAATA ATATTGCCAG TGAATACGAT
GCCATACGCC TCTATAACTA TAACTATAAT GATAACTACG CCACAGGCGT GGATGATGGC
ACAGGCGCAG ACAACGGCAC ATCGACCATT GATTTGATCA CCCGGGGCGC GCTGGTTTCG
CAGCAGGGCT ACGGAATTAA TATTGAAACC AATACCGCAG ACACCTATGT CACCGTGGGC
GGCTTGGTGC ACGGCGGCAA TGGCACCGCA ATCGGCATTC ATCGGCTTGA TAACATTCAA
ACATCGGCCA CGTTAGAGCT GCAATCTGGC TATGCCCTTG AAGGCGTTAC GCAGGCACTG
GTCTTCAATG GCAGTTATGC GGAGATCAAT GATGCCGCGC TGGATCTGGC AAACAGCCAT
CTGGTGCTGG GCGGAGCAGG AGACGCCGCT TTCGATCTCA CGCGTATTGA TAACCGTGAA
GAGGCCATTC TGGATGGCGA CCCGAACCGG ATCACCGGCT TCGGTACCCT GACCAAAACC
AACAACAGCA TCTGGACGTT AACCGGCGCC AATATGGCCG ACGGTGACGC CAATGCCTTC
CTGTCGGCCA ATATCGCCGG GGGGATTTTG GTGCTGGATA ACGCCACGCT GGGCCTGACA
CCTGACGCTG GGGCACTCAC TGGAGCCACA GTAAACCGCC TCAGTGCTGC CGATATCGCC
GCTGACCCGA CGCGGGTGGC TACCGAAACC GGTGCATTAA CCCTGGCTGA AGGCGGCGCG
CTGTCCTCGC TCGGTGACTC GGTTCTGAGC GGCAACCTCA TCAGCGCTGG CGGGATCCTG
CTGTCAAACC ACTATACCGG CGGCAATGGT GCCGCTACCG ATGATCGGCT GACCGTGACC
GGGACTTATT TTGGTGAAAA TAACGGTTCC GGTGAAGGGG CCTGGCTGGC ACTCGATACG
GTGCTGGGGG ATGACGATTC TGCCACCGAC CGGTTAGTGA TCAACGGCGA TGCCACCGGC
ACCACCTCGG TCCGGGTGAA CAATGCGGGC GGTCTGGGCG ATAAAACCCT CAATGGCATC
AATCTGATCA CCGTGGACGG TCTGGCGCAG GATGACACCT TCCTGCTGGC CGGGGATTAT
GTCACCACGG ATGGCTATCA GGCGGTGGTG GCCGGGGCGT ATGCCTACAC CTTACAGGCC
GACGGGGAAG CCGCTACCGC AGGCCGCAAC TGGTATCTCT CGTCAGAACT GATGCTAACC
GAGGGCGTGC GCTATCAGGT GGGCGTGCCG CTGTATGAAC AATATCCGCA GGTGCTGGCC
GCCCTGAACA CCCTGCCGAC GCTGCAACAG CGTGTCGGTA ACCGTTACGG GGCACCGGGC
GCACTGGCAG ACCTGAATTT TGACGATAAT CAATGGGCCT GGGGCCGTAT TGAAGGGAGC
CACCAGGTCA CCGACCCGGC CCGATCCACC AGCGGTTCAC AGCGTGAGAT TGATGTGTGG
AAGTTGCAGA CCGGCATTGA TGTGCCGTTG TATCAGAGCC AGGGCGGTTC ACTGCTGACC
GGCGGGGTGA ACTTCACCTA CGGAAAAGCC AAAGCGGATA TCCACTCATT CTTTGGTGAT
GGCCGCATCA ACAGCGCAGG TTACGGTCTT GGCACCAGCC TGACCTGGTA TGGCAATAAC
GGCGTGTATG TGGATGGCCA GTTGCAGACG ATGTGGTTTG ACAGCGACCT GAGCTCCCGT
ACCGCAGGGC ATGCAGTGGC CAGCGGTAAC AATGGTCGCG GGTATACCTC GGCGATAGAA
GCCGGTAAAG GTTACACACT GGGTCACGGC TTGTCGCTGA CTCCGCAGAT GCAGGTGACC
TACTCGCGGG TCGATTTCGA TACCTTCCGC GATCCGTTTG ATAGCGAAGT CTCGCTGCAA
GAGGGTGACA GCCTGCGGGG CCGCCTCGGT GTCTCACTGG ATAAGGAAAC GACCTGGAGT
GCGAAAGACG GCACCACCCG CCGCTCACAC ATTTACAGTC ATCTCGATCT GCACAATGAG
TTCCTCAATG GCAGCAAAGT ACAGGTCTCA GGGGGGGAGT TCGCCACCCG GGATGAGCGT
CAGTCGGTGG GGTTAGGCGC GGGCGGTACG TATGAATGGC AGAATGGTCG CTACGCGGTT
TACGGCAATG TCAATCTGCT GGGGGCTACG CGGAATGTCA GTGACAATTA TGCCGTCGGC
GGCACGATAG GTGCACGAGT GAGCTGGTAA
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| Protein sequence | MHIQFREPIS TSPAQPDAGR QHLFSRVPAA VMNPTTLAII VAFSTLVLPQ TAWAACNSSG
VGTYVCEGEN NTAISLFGTD IAVETRPGFG ITEHEITDSA LSLTGSGTIS YLDTNSSALD
TDSRYSLYIK NDTLITEQSA SINVQSNGSI SSGVYIDNQS SDDSTIRVDL SGILSSSLSG
APALSIFSSA GNDSTIILNT HAISGVTGIQ SDNNSQNGAT ITHVDVTGDI NVENSGVSIR
NAANGGTSII NFNSKSINTE YDSFYIQNTN YVGGVITDIN IDGDISSANS QAARIYNYTN
GGLASLRFRA NNVTGSTGLY IDNSSQNGAV TDIILTGDLT ATSGSALQAN AYSDEGNIET
AIKLNNVYSL YDALNISDYT RSGNILHDLD ISGTITAENG TGIKVMGAAG EGSSTMLINV
NNITSSSQSL DINNYNFLGS AFSAITATGH LTAEWGQGAM LQTHSSLGDA TTLIHFNDIT
AMSSGISLIN EANQGTSTTD ITVTGQINVS HGEGITLNAL TTDGRTLVNV DVNNIASEYD
AIRLYNYNYN DNYATGVDDG TGADNGTSTI DLITRGALVS QQGYGINIET NTADTYVTVG
GLVHGGNGTA IGIHRLDNIQ TSATLELQSG YALEGVTQAL VFNGSYAEIN DAALDLANSH
LVLGGAGDAA FDLTRIDNRE EAILDGDPNR ITGFGTLTKT NNSIWTLTGA NMADGDANAF
LSANIAGGIL VLDNATLGLT PDAGALTGAT VNRLSAADIA ADPTRVATET GALTLAEGGA
LSSLGDSVLS GNLISAGGIL LSNHYTGGNG AATDDRLTVT GTYFGENNGS GEGAWLALDT
VLGDDDSATD RLVINGDATG TTSVRVNNAG GLGDKTLNGI NLITVDGLAQ DDTFLLAGDY
VTTDGYQAVV AGAYAYTLQA DGEAATAGRN WYLSSELMLT EGVRYQVGVP LYEQYPQVLA
ALNTLPTLQQ RVGNRYGAPG ALADLNFDDN QWAWGRIEGS HQVTDPARST SGSQREIDVW
KLQTGIDVPL YQSQGGSLLT GGVNFTYGKA KADIHSFFGD GRINSAGYGL GTSLTWYGNN
GVYVDGQLQT MWFDSDLSSR TAGHAVASGN NGRGYTSAIE AGKGYTLGHG LSLTPQMQVT
YSRVDFDTFR DPFDSEVSLQ EGDSLRGRLG VSLDKETTWS AKDGTTRRSH IYSHLDLHNE
FLNGSKVQVS GGEFATRDER QSVGLGAGGT YEWQNGRYAV YGNVNLLGAT RNVSDNYAVG
GTIGARVSW
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