Gene YPK_3860 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagYPK_3860 
Symbol 
ID6089021 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameYersinia pseudotuberculosis YPIII 
KingdomBacteria 
Replicon accessionNC_010465 
Strand
Start bp4252441 
End bp4253049 
Gene Length609 bp 
Protein Length202 aa 
Translation table11 
GC content50% 
IMG OID641598952 
ProductLexA repressor 
Protein accessionYP_001722578 
Protein GI170026073 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG1974] SOS-response transcriptional repressors (RecA-mediated autopeptidases) 
TIGRFAM ID[TIGR00498] SOS regulatory protein LexA 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value0.528638 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAGCAC TAACTACCAG ACAGCAAGAG GTTTATGACC TGGTCCGCGA TCACCTAGCG 
CAAACAGGTA TGCCACCGAC CCGTGCCGAG ATTGCGCAGC GTCTGGGGTT TCGCTCTCCT
AACGCTGCTG AAGAGCATTT AAAAGCGCTG GCCCGTAAAG GTGTCATTGA AATTGTCTCA
GGAGCTTCCC GTGGCATTCG TTTGCTGATG GAAGAAGAAG AGGGCTTGCC ACTGATTGGC
CGGGTTGCCG CAGGTGAGCC ATTGCTGGCA CAGCAACATA TTGAAGGGCA TTATAAAGTT
GACCCATCCC TGTTCAAGCC AGGTGCGGAT TTCCTGCTGC GGGTTAATGG GATGTCGATG
AGAGATATCG GTATTCTAGA TGGTGACTTG TTGGCGGTAC ATAAAACGCA GGATGTGCGT
AATGGGCAAG TTGTCGTCGC GCGCATTGAT GATGAAGTCA CGGTAAAACG TTTGAAAAAA
CAAGGTAATA TCGTGCATCT CTTACCAGAA AACAGCGAGT TTCAGCCTAT CGTTGTTGAT
CTGCGTGAGC AGAGTTTTAC CATTGAAGGT TTGGCCGTCG GAGTTATCCG TAACGGGGAC
TGGATCTGA
 
Protein sequence
MKALTTRQQE VYDLVRDHLA QTGMPPTRAE IAQRLGFRSP NAAEEHLKAL ARKGVIEIVS 
GASRGIRLLM EEEEGLPLIG RVAAGEPLLA QQHIEGHYKV DPSLFKPGAD FLLRVNGMSM
RDIGILDGDL LAVHKTQDVR NGQVVVARID DEVTVKRLKK QGNIVHLLPE NSEFQPIVVD
LREQSFTIEG LAVGVIRNGD WI