Gene YPK_3858 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagYPK_3858 
Symbol 
ID6089313 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameYersinia pseudotuberculosis YPIII 
KingdomBacteria 
Replicon accessionNC_010465 
Strand
Start bp4250459 
End bp4251496 
Gene Length1038 bp 
Protein Length345 aa 
Translation table11 
GC content52% 
IMG OID641598950 
ProducttRNA-dihydrouridine synthase A 
Protein accessionYP_001722576 
Protein GI170026071 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0042] tRNA-dihydrouridine synthase 
TIGRFAM ID[TIGR00742] tRNA dihydrouridine synthase A 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value0.606559 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCACGAAG CTCAGACTTT TTCCAGTACG CCGGCCACCA AGCCGCAATA CCCCCTGCAA 
CGCTTCTCCG TCGCGCCGAT GCTCGATTGG ACGGATCGTC ATTGCCGTTA TTTTCACCGT
CTGCTCACTA AGCAAGCTCT GTTGTATACC GAAATGGTGA CCACCGGCGC GATTATCCAC
GGTAAAGCCG ATTATCTGGC TTATAGCGAG CAGGACCATC CGGTCGCTTT GCAATTAGGG
GGCAGCGATC CACAGGCATT GGCGCACTGT GCCAAGCTGG CTGAGCAACG CGGTTATAAC
GAAATCAATC TGAATGTGGG TTGTCCGTCA GATCGAGTAC AAAATGGCCG CTTTGGTGCT
TGTTTGATGG GGGAGGCCGA TCTGGTTGCC GATTGCATTA AAGCTATGCG TGATGCGGTA
GCTATTCCGG TGACGGTAAA AACCCGTATT GGGATTGACC AACTGGATAG CTATGAGTTT
CTATGCGAAT TCGTGCAAAC CGTCGCAGAA CGTGGCGAAT GCGAAATTTT CACTATTCAT
GCCCGTAAAG CCTGGCTCTC AGGGCTAAGC CCGAAAGAGA ATCGTGAAGT GCCGCCACTG
GATTATGAGC GTGTTTATCA GCTTAAGTGT GATTTCCCTG CGTTGACGAT TGCCATTAAT
GGTGGGGTGA AAACATTGGC TGAAGCTAAA GAGCACCTCA AGCACCTTGA TGGCGTGATG
ATGGGCCGTG AAGCCTATCA GAATCCGGGA ATTTTGACGC AAGTAGACCG CGAGCTGTTT
GATCCTCACG CGCCAGTGGT TGATAGCGTT AAAGCCATTG AGGCGCTGTA TCCTTATATT
GAGCAGGAAT TGTCTCAAGG GGCCTATTTG GGCCACATAA CCCGCCATAT TCTGGGTATT
TTCCAAGGAA TCCCCGGAGC GCGCCAATGG CGTCGGCATT TAAGCGAAAA TGCCCATAAG
CCCGGAGCGG GGGTTTCTGT TGTGGAGGAG GCTTTAGCGC TGGTATCCCC TTCGTACTAC
GAATCCGTAG GGGGTTAG
 
Protein sequence
MHEAQTFSST PATKPQYPLQ RFSVAPMLDW TDRHCRYFHR LLTKQALLYT EMVTTGAIIH 
GKADYLAYSE QDHPVALQLG GSDPQALAHC AKLAEQRGYN EINLNVGCPS DRVQNGRFGA
CLMGEADLVA DCIKAMRDAV AIPVTVKTRI GIDQLDSYEF LCEFVQTVAE RGECEIFTIH
ARKAWLSGLS PKENREVPPL DYERVYQLKC DFPALTIAIN GGVKTLAEAK EHLKHLDGVM
MGREAYQNPG ILTQVDRELF DPHAPVVDSV KAIEALYPYI EQELSQGAYL GHITRHILGI
FQGIPGARQW RRHLSENAHK PGAGVSVVEE ALALVSPSYY ESVGG