Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | YPK_3858 |
Symbol | |
ID | 6089313 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Yersinia pseudotuberculosis YPIII |
Kingdom | Bacteria |
Replicon accession | NC_010465 |
Strand | - |
Start bp | 4250459 |
End bp | 4251496 |
Gene Length | 1038 bp |
Protein Length | 345 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 641598950 |
Product | tRNA-dihydrouridine synthase A |
Protein accession | YP_001722576 |
Protein GI | 170026071 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0042] tRNA-dihydrouridine synthase |
TIGRFAM ID | [TIGR00742] tRNA dihydrouridine synthase A |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 0.606559 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCACGAAG CTCAGACTTT TTCCAGTACG CCGGCCACCA AGCCGCAATA CCCCCTGCAA CGCTTCTCCG TCGCGCCGAT GCTCGATTGG ACGGATCGTC ATTGCCGTTA TTTTCACCGT CTGCTCACTA AGCAAGCTCT GTTGTATACC GAAATGGTGA CCACCGGCGC GATTATCCAC GGTAAAGCCG ATTATCTGGC TTATAGCGAG CAGGACCATC CGGTCGCTTT GCAATTAGGG GGCAGCGATC CACAGGCATT GGCGCACTGT GCCAAGCTGG CTGAGCAACG CGGTTATAAC GAAATCAATC TGAATGTGGG TTGTCCGTCA GATCGAGTAC AAAATGGCCG CTTTGGTGCT TGTTTGATGG GGGAGGCCGA TCTGGTTGCC GATTGCATTA AAGCTATGCG TGATGCGGTA GCTATTCCGG TGACGGTAAA AACCCGTATT GGGATTGACC AACTGGATAG CTATGAGTTT CTATGCGAAT TCGTGCAAAC CGTCGCAGAA CGTGGCGAAT GCGAAATTTT CACTATTCAT GCCCGTAAAG CCTGGCTCTC AGGGCTAAGC CCGAAAGAGA ATCGTGAAGT GCCGCCACTG GATTATGAGC GTGTTTATCA GCTTAAGTGT GATTTCCCTG CGTTGACGAT TGCCATTAAT GGTGGGGTGA AAACATTGGC TGAAGCTAAA GAGCACCTCA AGCACCTTGA TGGCGTGATG ATGGGCCGTG AAGCCTATCA GAATCCGGGA ATTTTGACGC AAGTAGACCG CGAGCTGTTT GATCCTCACG CGCCAGTGGT TGATAGCGTT AAAGCCATTG AGGCGCTGTA TCCTTATATT GAGCAGGAAT TGTCTCAAGG GGCCTATTTG GGCCACATAA CCCGCCATAT TCTGGGTATT TTCCAAGGAA TCCCCGGAGC GCGCCAATGG CGTCGGCATT TAAGCGAAAA TGCCCATAAG CCCGGAGCGG GGGTTTCTGT TGTGGAGGAG GCTTTAGCGC TGGTATCCCC TTCGTACTAC GAATCCGTAG GGGGTTAG
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Protein sequence | MHEAQTFSST PATKPQYPLQ RFSVAPMLDW TDRHCRYFHR LLTKQALLYT EMVTTGAIIH GKADYLAYSE QDHPVALQLG GSDPQALAHC AKLAEQRGYN EINLNVGCPS DRVQNGRFGA CLMGEADLVA DCIKAMRDAV AIPVTVKTRI GIDQLDSYEF LCEFVQTVAE RGECEIFTIH ARKAWLSGLS PKENREVPPL DYERVYQLKC DFPALTIAIN GGVKTLAEAK EHLKHLDGVM MGREAYQNPG ILTQVDRELF DPHAPVVDSV KAIEALYPYI EQELSQGAYL GHITRHILGI FQGIPGARQW RRHLSENAHK PGAGVSVVEE ALALVSPSYY ESVGG
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