Gene YPK_3802 details

Gene Information

• Locus tag: YPK_3802
• ID: 6091341
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Yersinia pseudotuberculosis YPIII
• Kingdom: Bacteria
• Replicon accession: NC_010465
• Strand: -
• Start bp: 4189580
• End bp: 4191493
• Gene Length: 1914 bp
• Protein Length: 637 aa
• Translation table: 11
• GC content: 51%
• IMG OID: 641598892
• Product: N-acetylmuramoyl-L-alanine amidase
• Protein accession: YP_001722522
• Protein GI: 170026017
• COG category: [M] Cell wall/membrane/envelope biogenesis
• COG ID: [COG0860] N-acetylmuramoyl-L-alanine amidase

Plasmid Coverage information

• Num covering plasmid clones: 10
• Plasmid unclonability p-value: 0.0514476
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGATGCATA GCCTCTCGCT GATATGTCGC TGGAAACACG GTTTCGCTAC GATTCGCCAT 
TTCACTACGA TTTGCCATTT CACTACTGTC CGCCGCGTCA TTACTGCTCG TCGTTTCGCC 
ACGGTCACGC GGATGGTTAT TGGTTTATTA ACGCTCAGTT TATTCGCTCT GCCTCCCGCA 
TTTGCCATGA AACTCACTGA CATTAAGGTG ACCAACGGGG CGAGTGAAAG TAAGGTTACT 
CTCAGCTTTG ATGGTAAGCC AATTTATGCA TTTTTCTCGC TAAACTCGCC GGAGCGGGTG 
GTCTTGGATG TCCGCCAAAG TGGCAATATC TCAGGGTTGC CGCTGGAGTT CAGTGGGCAG 
AACCTGTTGA AACGAATTCG CTCCAGCACT CCGAAAGATG AACAAAGTAC CCGCCTGGTA 
CTGGAACTGA CGCAGAAAGT AAAAACCCGT GCTGTCACCC AACAGTCGGG CAATAACTAC 
ACGGTAGTGC TTACCATGAC GGCCGTCGCC AGTGCCCCTG TTCGTCAGGC GCAGGCCTCA 
TTAAATCAGA CGAATACCCC GAGTCCTAAT GCCGGGCGTG TGGTGCCTCA AGTCACGAGC 
AAGGATTCAG TAGCTAAAAA TCCGTTTAAT AATAAGCCCG TCGTCGTGGT CAGTAGCGAA 
AACGTGACCA CGAATACTGC CCGTCAGATT AAAACTGTGA GTGCGGCTAA CAGTAGCCGT 
GTTGTGGTGG CCATAGATGC CGGTCATGGT GGTCAGGACC CAGGCGCTAT CGGGCAAAAT 
GGTCTGAAAG AGAAAAATGT CACGATCTCC ATTGCCCGCC GGCTTGAGGC GCTGCTCAAC 
CGGGATCCGA TGTTTAAACC GGTGCTGACC CGCAATGGTG ATTACTTTAT CTCGGTCATG 
GGGCGCTCTG ATGTTGCCCG TAAACAGGGG GCTAATGTCT TGATTTCTAT TCATGCTGAT 
GCCGCGCCAA ATCGCAGTGC GACAGGGGCA TCGGTTTGGG TGTTATCAAA CCGCCGGGCT 
AATAGTGAAA TGGGGAACTG GCTGGAGCAA CATGAAAAGC AATCAGAACT ACTCGGGGGC 
GCTGGTGATG TACTGGCAAA CACGGCTTCA GACCCTTATT TGAGTCAGGC GGTTCTGGAT 
TTACAATTTG GTCACTCCCA GAGAGTGGGT TATGACGTCG CCACTAAAGT GCTGCGTGAG 
CTACAAACGG TGGGTGATAT TCATAAACGC AAGCCGGAGC ACGCCAGCCT TGGGGTGTTA 
CGTTCACCGG ATATTCCGTC GCTATTAGTG GAAACCGGCT TTATCAGTAA TAGTACGGAG 
GAACGGCTGC TTGGCAGTAG CGCGTATCAG GAGAAGATTG CTCAGGCCAT TTATAAAGGC 
TTGCGCAGTT ATTTCCTCGC GAATCCGTTA CAAGCCGACC CAAAGGTCGA AAGCCGTCCG 
CTCATTGAAA CAGCGGCGGT TGACTCCTCA AAACAGCGTT CAGGTATTAG TCAGCCGGAA 
CCTATTGTGA ATAATATAAG CAGTAATGCG CAAAGTGGCC GGTCATCGGC TACTCTGCCT 
GCAGGTAAGA GCAAAATCCA CAACGTGCAG CGTGGGGAGA CGTTATCGGG TATTGCCAGC 
CAATACGGCG TCAGCATGGC TGTTTTACGA CAAAATAATA CGCTGAAAAA TGATGTAATC 
TGGGTAGGCC AGCGGTTGAA AGTGCCCGCG TCGGGCAGTA CGGTAACGGC AGTCAAGCCT 
AAAACAGCCG CTGTAGCAAA AAGTAAACCT ATTAAGCATC AGGTGAAACG CGGTGATACG 
CTGTCAGCCA TTGCGGCGAG ATACGGTGTA TCAATGAGTG AGATTGAGCG GGTGAATAAA 
ATCAAGTCAG GTAATGTTCA GCTTGGGCAA ACGCTCACTA TTCCACAATC GTAA 

 

Protein sequence

MMHSLSLICR WKHGFATIRH FTTICHFTTV RRVITARRFA TVTRMVIGLL TLSLFALPPA 
FAMKLTDIKV TNGASESKVT LSFDGKPIYA FFSLNSPERV VLDVRQSGNI SGLPLEFSGQ 
NLLKRIRSST PKDEQSTRLV LELTQKVKTR AVTQQSGNNY TVVLTMTAVA SAPVRQAQAS 
LNQTNTPSPN AGRVVPQVTS KDSVAKNPFN NKPVVVVSSE NVTTNTARQI KTVSAANSSR 
VVVAIDAGHG GQDPGAIGQN GLKEKNVTIS IARRLEALLN RDPMFKPVLT RNGDYFISVM 
GRSDVARKQG ANVLISIHAD AAPNRSATGA SVWVLSNRRA NSEMGNWLEQ HEKQSELLGG 
AGDVLANTAS DPYLSQAVLD LQFGHSQRVG YDVATKVLRE LQTVGDIHKR KPEHASLGVL 
RSPDIPSLLV ETGFISNSTE ERLLGSSAYQ EKIAQAIYKG LRSYFLANPL QADPKVESRP 
LIETAAVDSS KQRSGISQPE PIVNNISSNA QSGRSSATLP AGKSKIHNVQ RGETLSGIAS 
QYGVSMAVLR QNNTLKNDVI WVGQRLKVPA SGSTVTAVKP KTAAVAKSKP IKHQVKRGDT 
LSAIAARYGV SMSEIERVNK IKSGNVQLGQ TLTIPQS