Gene YPK_3796 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagYPK_3796 
Symbol 
ID6089754 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameYersinia pseudotuberculosis YPIII 
KingdomBacteria 
Replicon accessionNC_010465 
Strand
Start bp4183413 
End bp4184675 
Gene Length1263 bp 
Protein Length420 aa 
Translation table11 
GC content50% 
IMG OID641598886 
ProductFtsH protease regulator HflK 
Protein accessionYP_001722516 
Protein GI170026011 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG0330] Membrane protease subunits, stomatin/prohibitin homologs 
TIGRFAM ID[TIGR01933] HflK protein 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCGTGGA ATCAGCCCGG TAATAACGGA CAGGACCGCG ATCCGTGGGG GAGCAGCAAT 
AATAATGGCG GCAACTCTGG CGGAAATAAT AATAATAAAG GTGGTCGTGA CCAAGGGCCG
CCGGATCTGG ATGATATCTT CCGTAAACTG AGCAAAAAAC TGAGTAGCCT CGGTGGCAAA
GGTAGCGGAA GTGGTGGTAA TGGCGCATCA CATGGCCCTG GTTTCAGTGG TCGTGTTGTG
GGTATCGCTG TTGTTGCTGT TGTGGTCATC TGGGCTGCAA GCGGTTTCTA TACCATTAAA
GAAGCTGAGC GTGGTGTTGT CACCCGTTTA GGTAAATTGA GCCACATTGT GCAGCCTGGC
CTGAACTGGA AACCGACCTT TATCGATGAA GTGGTTCCGG TTAACGTCGA GGCCGTGCGT
GAATTGGCCG CTTCTGGGGT CATGCTGACC TCCGATGAGA ACGTAGTGCG CGTCGAAATG
AACGTTCAGT ATCGTGTGAC TGATCCGGCC GCTTATCTGT TTAGCGTGAC GAATCCGGAT
GACAGTCTGC GTCAGGCAAC AGACAGCGCA GTACGTGGTG TTATTGGTAA ATACACCATG
GATAAAATCC TCACTGAAGG CCGTACCATC GTCCGTAGTG ATACCCAACG TGTGCTGGAA
GAAACGATTC GTCCGTACCA AATGGGGATT ACGTTATTGG ACGTTAACTT CCAGGCTGCT
CGTCCGCCAG AAGAAGTTAA AGCGGCATTT GATGACGCGA TTGCTGCTCG TGAAAACGAA
CAACAATACA TTCGCGAAGC AGAAGCCTAT ACCAACGAAG TTCAACCACG TGCTAATGGT
CAGGCGCAGC GTCTGTTAGA AGATGCTCGT GCTTATGCCG CACGTAAAGT GTTGGAAGCA
CAGGGTGAAG TCGCTGGTTT TGCTAAGTTG CTGCCAGAGT ATAAAGCGGC ACCGGAAATT
ACCCGTGAGC GTCTGTACAT CGAAACCATG GAAAAGGTCC TGGGCAAAAC CAATAAAGTG
CTGGCGAATG ATAAAGGCAA TAATTTGATG GTGTTGCCAC TGGATCAAAT GCTGCGTGGT
CAAGGTGCTG CTAATAAAGT TGATGGCAAC AAAGATACCA GTCTGATTCG TTTGAATCCG
GCACCCAGCA GCCAACAAAC TGGTGCGAGT AATTCAAATA CCAGCTCAGG CAGTGGTTCT
ATCATGGATC AGCGCCGGGT GAATGCTCAG CGTGATACTT CCACTCGCGT AGGGAGAGAA
TAA
 
Protein sequence
MAWNQPGNNG QDRDPWGSSN NNGGNSGGNN NNKGGRDQGP PDLDDIFRKL SKKLSSLGGK 
GSGSGGNGAS HGPGFSGRVV GIAVVAVVVI WAASGFYTIK EAERGVVTRL GKLSHIVQPG
LNWKPTFIDE VVPVNVEAVR ELAASGVMLT SDENVVRVEM NVQYRVTDPA AYLFSVTNPD
DSLRQATDSA VRGVIGKYTM DKILTEGRTI VRSDTQRVLE ETIRPYQMGI TLLDVNFQAA
RPPEEVKAAF DDAIAARENE QQYIREAEAY TNEVQPRANG QAQRLLEDAR AYAARKVLEA
QGEVAGFAKL LPEYKAAPEI TRERLYIETM EKVLGKTNKV LANDKGNNLM VLPLDQMLRG
QGAANKVDGN KDTSLIRLNP APSSQQTGAS NSNTSSGSGS IMDQRRVNAQ RDTSTRVGRE