Gene YPK_3776 details

Gene Information

• Locus tag: YPK_3776
• Symbol: cpdB
• ID: 6088873
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Yersinia pseudotuberculosis YPIII
• Kingdom: Bacteria
• Replicon accession: NC_010465
• Strand: +
• Start bp: 4165808
• End bp: 4167766
• Gene Length: 1959 bp
• Protein Length: 652 aa
• Translation table: 11
• GC content: 49%
• IMG OID: 641598866
• Product: bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein
• Protein accession: YP_001722496
• Protein GI: 170025991
• COG category: [F] Nucleotide transport and metabolism
• COG ID: [COG0737] 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases
• TIGRFAM ID: [TIGR01390] 2',3'-cyclic-nucleotide 2'-phosphodiesterase

Plasmid Coverage information

• Num covering plasmid clones: 23
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTTCAAGC GTCCGCTGAC GTTATCCCTC CTTGCCAGCC TGATTGCTGT CGCGACATCA 
CTGTCTGCTG CCACTGTTGA TTTACGAGTA TTGGAAACCA CCGACCTACA CAGCAACATG 
ATGGATTTTG ATTACTACAA AGATAAACCC ACGGAAAAAT TCGGGCTGGT ACGCACTGCC 
AGCTTGATTA TCGCAGCCCG GCAACAAGCC ACTAACAGCG TGCTGGTGGA TAACGGTGAC 
GTGATCCAGG GGAGTCCGCT TGGTGATTAT ATCGCGGCTA AAGGGTTAAA CGACGGAGAG 
ATTCACCCAG TCTATAAAGC GATGAACACG CTGGATTATG CGGTCGGCAA TATCGGTAAC 
CATGAGTTTA ACTATGGGCT GGACTACCTG AAGAAATCAC TGGCAGGGGC GAAATTCCCG 
TATGTTAACG CCAACGTGAT TGATGTTAAA ACAGGTAAAC CCTTGTTCCA GCCTTACCTG 
ATCATCGATA CCCCAGTGAA AGATCGTGAC GGAAAGAGCC ATAACCTGCG GATCGGGTAC 
ATTGGTTTTG TACCGCCTCA AGTGATGATC TGGGATAAAG CGAATCTGAG TGGCAAAGTC 
ACGGTGAACG ATATCACTGA AACCGCCAAG AAGTGGGTAC CGGAGATGCG TGAGCAAGGG 
GCTGATCTGG TTGTTGCTAT CCCGCACTCT GGTCTTTCCA GCGATCCTTA TAAAACCATG 
GCTGAAAATT CGGTTTATTA CCTCAGTCAA GTTCCAGGTA TCGATACCAT CATGTTCGGC 
CACGCACATG GTGTGTTCCC CAGCAAAGAT TTTGCCGCCA TCAAAGGCGC GGATATCACT 
CAAGGTACCT TAAACGGTAT TCCGGCAGTG ATGCCTGGCC AATGGGGTGA CCATTTAGGC 
GTAGTCGATT TTGTCCTGAA TAATGATCAG GGGAAATGGC AAGTTATCGA TGCCAAGGCT 
GAAGCCCGTC CTATCTACGA TAAAACAGCA CAAAAATCAC TGGCGGCAGA AAATGCCAAA 
CTGGTGGAAG TACTGGCAGT TGATCACCAG AGCACCCGTG ATTTTGTCAG CCAACCGATT 
GGTGAAGCAT CAGATAACAT GTACAGCTAT CTGGCACTGA TCCAAGATGA CCCCACCGTG 
CAGATTGTGA ATAACGCCCA GCGCGCGTAT ACCGAACATT TTATTCAGGG CGATCCTGAT 
TTAGCTGACC TCCCGGTACT GTCTGCCGCT GCACCGTTTA AAGCCGGTGG CCGCAAAAAT 
GATCCCACCA GTTTTGTTGA GGTGGAAAAA GGGAAGCTGA CCTTCCGTAA CGCCGCGGAT 
TTGTACCTTT ATCCAAATAC GCTCGTCGTC GTGAAAGCCA GTGGGGCGGA GGTTAAGCAG 
TGGCTGGAGT GTTCCGCCGC ACAGTTTAAT CAAATCGATA TTAACAGCAG CAAACCGCAA 
TCGTTGATTA ATTGGGATGG TTTTCGTACT TATAATTTCG ATGTCATCGA TGGTGTAGAG 
TATGAAATTG ATGTCAGCCA GCCTGCCCGT TACGATGGCG AATGTACGCT AATCAACGAC 
CAAGCTGAAC GTATCAAAAA CCTGACGTTT AACGGTAAGC CTATCGATCC GAAAGCCACA 
TTCCTGATTG CCACCAATAA CTACCGCGCT TACAGCGGTA AGTTTGCCGG TACCGGTGAC 
AGCCATATCG CATTCGCTTC GCCCGACGAA AATCGAGCGG TCCTGTCTGC ATATATCAGT 
GCTGAAACCA AGAAAAAGGG TCAGGTCATC CCGCGAGCCG ACAACAATTG GCGTCTGGCA 
ACCCTTGATA GCAAGCAACC TTTGGATGTT CGTTTTGAAA CCTCTCCAAC TGCTAAGGCC 
GCTGATTTTA TTAAACAAAA AGCGCAATAC CCAATGAAAG TACAGGGTAC TGATGAGGTT 
GGCTTCGCCG TTTATCAAAT CGATTTACAG AGAAAGTAA 

 

Protein sequence

MFKRPLTLSL LASLIAVATS LSAATVDLRV LETTDLHSNM MDFDYYKDKP TEKFGLVRTA 
SLIIAARQQA TNSVLVDNGD VIQGSPLGDY IAAKGLNDGE IHPVYKAMNT LDYAVGNIGN 
HEFNYGLDYL KKSLAGAKFP YVNANVIDVK TGKPLFQPYL IIDTPVKDRD GKSHNLRIGY 
IGFVPPQVMI WDKANLSGKV TVNDITETAK KWVPEMREQG ADLVVAIPHS GLSSDPYKTM 
AENSVYYLSQ VPGIDTIMFG HAHGVFPSKD FAAIKGADIT QGTLNGIPAV MPGQWGDHLG 
VVDFVLNNDQ GKWQVIDAKA EARPIYDKTA QKSLAAENAK LVEVLAVDHQ STRDFVSQPI 
GEASDNMYSY LALIQDDPTV QIVNNAQRAY TEHFIQGDPD LADLPVLSAA APFKAGGRKN 
DPTSFVEVEK GKLTFRNAAD LYLYPNTLVV VKASGAEVKQ WLECSAAQFN QIDINSSKPQ 
SLINWDGFRT YNFDVIDGVE YEIDVSQPAR YDGECTLIND QAERIKNLTF NGKPIDPKAT 
FLIATNNYRA YSGKFAGTGD SHIAFASPDE NRAVLSAYIS AETKKKGQVI PRADNNWRLA 
TLDSKQPLDV RFETSPTAKA ADFIKQKAQY PMKVQGTDEV GFAVYQIDLQ RK