| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YPK_3653 |
|---|
| Symbol | |
|---|
| ID | 6091165 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Yersinia pseudotuberculosis YPIII |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010465 |
|---|
| Strand | + |
|---|
| Start bp | 4033752 |
|---|
| End bp | 4034771 |
|---|
| Gene Length | 1020 bp |
|---|
| Protein Length | 339 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 641598740 |
|---|
| Product | autoinducer AI-2 ABC transporter, periplasmic AI-2-binding protein |
|---|
| Protein accession | YP_001722373 |
|---|
| Protein GI | 170025868 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1879] ABC-type sugar transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.502684 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGAACAC AAAGATTAAA AAAATTAGCA CTGGTTTGCG CTCTTGGATT TGCCTGTATC
ACTACCGCAC AAGCTGCGGA ACGCATCGCA TTTATCCCGA AACTGGTCGG GGTCGGTTTC
TTCACCAGTG GCGGTAAAGG TGCCGTCGAT GCAGGTAAAG CATTGGGGGT GGATGTCACC
TATGACGGCC CGACCGAACC GAGCGTTTCC GGCCAGGTCC AATTGATCAA TAACTTTGTT
AATCAGGGCT ATAACGCCAT CGTGGTGTCT GCGGTATCAC CGGATGGCCT GTGCCCAGCC
TTGAAGCGCG CCATGCAACG GGGCGTCAAA ATCCTAACCT GGGACTCCGA TACCAAACCA
GAGTGTCGTT CGGTGTATAT CAACCAAGGT ACGCCAAATC AATTGGGATC AATGTTGGTG
GATATGGCGG CTAATCAGGT GAAAAAAGAT CAAGCCAAAG TGGCGTTCTT CTATTCCAGC
CCGACGGTGA CCGATCAGAA CCAGTGGGTC AATGAGGCGA AGAAAAAGAT TCAACAAGAG
CATCCCGGCT GGGAAATCGT CACCACCCAG TTTGGTTATA ACGATGCCAC AAAATCCCTG
CAAACCGCCG AGGGTATTTT AAAAGCCTAT GGCGATTTGG ATGCGATTAT TGCTCCGGAC
GCTAACGCCC TACCTGCGGC CGCACAAGCC GCCGAAAACC TGAAGCGCGC TAATGTTGCC
ATCGTCGGCT TCAGTACCCC GAACGTGATG CGCCCCTATG TCGAGCGTGG CACGGTCAAA
GAGTTCGGCC TCTGGGATGT GGTGAATCAA GGCAAAATCT CAGTGTATGT CGCCAATGAG
ATGCTGAAAA AAGGCGATCT GAATGTAGGG GATAAGATTG ATATCCCGAA TATTGGTGTG
GTTGAGGTCT CCCCTAACCG TGTGCAGGGC TACGACTATG AGGCGAAAGG CAACGGTATC
GTTTTACTGC CACAGCGCGT CATCTTCACC AAAGAAAATA TCAGTAAATA CGACTTTTAA
|
|---|
| Protein sequence | MRTQRLKKLA LVCALGFACI TTAQAAERIA FIPKLVGVGF FTSGGKGAVD AGKALGVDVT
YDGPTEPSVS GQVQLINNFV NQGYNAIVVS AVSPDGLCPA LKRAMQRGVK ILTWDSDTKP
ECRSVYINQG TPNQLGSMLV DMAANQVKKD QAKVAFFYSS PTVTDQNQWV NEAKKKIQQE
HPGWEIVTTQ FGYNDATKSL QTAEGILKAY GDLDAIIAPD ANALPAAAQA AENLKRANVA
IVGFSTPNVM RPYVERGTVK EFGLWDVVNQ GKISVYVANE MLKKGDLNVG DKIDIPNIGV
VEVSPNRVQG YDYEAKGNGI VLLPQRVIFT KENISKYDF
|
|---|
| |