Gene YPK_3621 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagYPK_3621 
Symbol 
ID6089394 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameYersinia pseudotuberculosis YPIII 
KingdomBacteria 
Replicon accessionNC_010465 
Strand
Start bp3995527 
End bp3996909 
Gene Length1383 bp 
Protein Length460 aa 
Translation table11 
GC content55% 
IMG OID641598705 
ProductDNA repair protein RadA 
Protein accessionYP_001722341 
Protein GI170025836 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG1066] Predicted ATP-dependent serine protease 
TIGRFAM ID[TIGR00416] DNA repair protein RadA 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCGAAAG CACCCAAACG GGCGTTTGTC TGTAATGAAT GTGGCGCAGA TTATCCGCGT 
TGGCAGGGGC AATGCAGCGC CTGTAACGCC TGGAATACCA TTACCGAAGT CAGGCTGGCG
GCGGTAGCGT CATCGTCTCG TAATGACCGT TTTGTTGGTT ATGCTGGCGA TGCCGGTGTT
AGCCGGGTAC AGAAGCTGTC CGATATTAGT CTGGAGGAGC TGCCGCGCTT CTCAACTGGC
TTCCTCGAGT TTGATCGGGT GCTGGGCGGC GGGGTGGTAC CGGGCAGTGC CATTCTGATT
GGCGGTAACC CCGGTGCAGG CAAAAGTACT CTATTGCTGC AAACCCTCTG CAAACTGTCG
GAAAACATGA AAACCCTGTA TGTCACTGGC GAAGAGTCGT TGCAGCAGGT CGCCATGCGT
GCACACCGTC TGGGCCTGCC CACGGCGGGG CTGAATATGT TGTCGGAAAC CAGTATCGAG
CAGATTTGCC TGATAGCAGA GCAAGAACAG CCACGGCTGA TGGTCATCGA CTCCATTCAA
GTAATGCATA TGGCGGATAT CCAATCATCG CCGGGCAGTG TGGCGCAAGT GCGCGAAACC
GCGGCTTATC TGACTCGTTT TGCTAAAACC CGGGGTGTCG CCATCGTGAT GGTGGGGCAT
GTGACCAAAG ACGGTTCGCT GGCCGGGCCG AAGGTATTAG AACACTGTAT TGACTGCTCC
GTGATGCTCG ATGGTGATGG CGACTCACGC TTTCGTACTC TGCGTAGCCA CAAGAACCGC
TTTGGTGCTG TTAACGAACT GGGTGTGTTT GCCATGACCG AGCAAGGTCT ACGGGAAGTC
AGTAATCCAT CGGCGATCTT TTTGAGCCGT GGCGATGAAG TGACCGCAGG CAGTTCAGTG
ATGGTGGTGT GGGAAGGGAC TCGCCCATTG CTGGTGGAGA TCCAAGCGCT GGTAGATCAT
TCGATGATGT CGAATCCACG CCGGGTCGCT GTCGGGCTGG AACAAAACCG TTTGGCCATC
TTATTGGCTG TTTTACACCG CCACGGTGGT TTGCAGATGT CAGATCAAGA CGTGTTCGTT
AACGTCGTTG GCGGGGTGAA AGTCACTGAA ACCAGCGCTG ATCTGGCATT GTTGATGTCG
CTGGTCTCCA GTCTGCGTGA CCGCCCATTA CCGCAAGATT TAGTGGTGTT TGGCGAGGTG
GGGCTGGCCG GTGAAATCCG CCCGGTACCA AGTGGTCAGG AGCGTATCTC CGAGGCGGCA
AAGCACGGTT TTAAACGTGC CATCGTGCCT TATGCCAATA TGCCTAAAAA ACCGCTACCC
AATATGCAGG TTTTCGGGGT AAAAAAACTG GCCGATGCGT TGGCTGTTTT AGAAGATTTA
TAA
 
Protein sequence
MAKAPKRAFV CNECGADYPR WQGQCSACNA WNTITEVRLA AVASSSRNDR FVGYAGDAGV 
SRVQKLSDIS LEELPRFSTG FLEFDRVLGG GVVPGSAILI GGNPGAGKST LLLQTLCKLS
ENMKTLYVTG EESLQQVAMR AHRLGLPTAG LNMLSETSIE QICLIAEQEQ PRLMVIDSIQ
VMHMADIQSS PGSVAQVRET AAYLTRFAKT RGVAIVMVGH VTKDGSLAGP KVLEHCIDCS
VMLDGDGDSR FRTLRSHKNR FGAVNELGVF AMTEQGLREV SNPSAIFLSR GDEVTAGSSV
MVVWEGTRPL LVEIQALVDH SMMSNPRRVA VGLEQNRLAI LLAVLHRHGG LQMSDQDVFV
NVVGGVKVTE TSADLALLMS LVSSLRDRPL PQDLVVFGEV GLAGEIRPVP SGQERISEAA
KHGFKRAIVP YANMPKKPLP NMQVFGVKKL ADALAVLEDL