| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YPK_3616 |
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| Symbol | |
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| ID | 6088409 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Yersinia pseudotuberculosis YPIII |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010465 |
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| Strand | + |
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| Start bp | 3988992 |
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| End bp | 3990302 |
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| Gene Length | 1311 bp |
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| Protein Length | 436 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 641598700 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_001722336 |
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| Protein GI | 170025831 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 35 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACACGA TAAACACGAT AAAAAACCAA TCTATGAAGC CGAAAAAAAA TCACAATAGC
GCAGAAAAAC TCCCGACACT TGCTGGTGTC TTGCGGCGCA TACATTTGTC TGTCGCCATT
GTGTCTGTAG TAACAGCCTG TATTTTCCTC ACCGTCGCCG CGTTATTTGC CTTACGGGTT
TATGTTGATC ACAACCTGCA TTTGATCGCC CGCGCCATCA GTTATACCAC CGAGGCCGCC
GTCGTTTTTG GTGATAACGT GGAGGCTAAC GAGTTATTGG CGCTGATTGC CTCGAATGAA
GAAGTGGCAG AAGCGAAGAT CATTGATAAA CATAATCGTC AGATAGCTTA CTGGGCGCTA
CCTGACGATG GGCCTATCCA TCATATGGAG CAAATTGTTG CCCGTTGGAT ACTGCCTGCC
CCTGTCGTGT TACCGATGTT TCATGCTGGC GATGAGATTG GCAAAATTGT CATTGTTGGG
CATGGCGGCA GCTTATTGCG TTTCTTGCTA CAAGGTCTGG CGGGGATGTT GGCGTGCCTG
ACGGTCAGTA CATTGGTCGC ACTTTTCCTA TCACGGCGGA TGTTGCTTGG TATTGTTGGC
TCGCTTAAGA GGATCACTGA GGTGGCTCAT AATGTCAGCC GCCACCGCAG TTTTGGTCAA
CGGGTTCCTT CAGCAAAGGT GGCCGAATTG AACGAGCTCA GTAATGACTT TAACGGGTTG
CTGGAAGAGC TTGAGGTGTG GCAGAAACAT CTGACGCAAG AAAATGACTC ACTGGCTTAC
CGTGCCGCCC ATGACAGCCT GACCGGACTC GCGAATCGTA CGTTTTTTGA AGGGCGCTTG
AGCCGGACGC TTAATGATTG CCAACCCGGC GAACACACCG CCGTGTTATT CCTGGATGGC
GACCATTTTA AAGACGTCAA TGATAATTAT GGCCATGCCG CAGGCGATCT TGTGCTCACA
ACAATTGCCG TCCGTATCCG CGCCTTATTG CGTGAAACTG ATTTAGTGGC TCGCTTAGGT
GGCGATGAGT TTGCGGTGTT ACTGACCCCT ATCCACAACT TGGATGATGT TTTAACTATT
GCCGATCATA TTATCGACAG TATGGCCCTA CCAATAATAC TGGCTGAAGG CTGTGAAATT
ACCGTCTCAC TCAGTATTGG TATTGCTGTT TATCCTGATC ATGCACAAAC GCCGGAAAAA
TTATTACAAC GAGCGGATGA AGCGATGTAT CAGGCGAAGA AAAACTTCCG GTCTGGCAAG
CGTATTTTTG CCTATCAGCC GAATACGACT AACACAGAAA GTTTAGGATA G
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| Protein sequence | MNTINTIKNQ SMKPKKNHNS AEKLPTLAGV LRRIHLSVAI VSVVTACIFL TVAALFALRV
YVDHNLHLIA RAISYTTEAA VVFGDNVEAN ELLALIASNE EVAEAKIIDK HNRQIAYWAL
PDDGPIHHME QIVARWILPA PVVLPMFHAG DEIGKIVIVG HGGSLLRFLL QGLAGMLACL
TVSTLVALFL SRRMLLGIVG SLKRITEVAH NVSRHRSFGQ RVPSAKVAEL NELSNDFNGL
LEELEVWQKH LTQENDSLAY RAAHDSLTGL ANRTFFEGRL SRTLNDCQPG EHTAVLFLDG
DHFKDVNDNY GHAAGDLVLT TIAVRIRALL RETDLVARLG GDEFAVLLTP IHNLDDVLTI
ADHIIDSMAL PIILAEGCEI TVSLSIGIAV YPDHAQTPEK LLQRADEAMY QAKKNFRSGK
RIFAYQPNTT NTESLG
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