Gene YPK_3562 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagYPK_3562 
Symbol 
ID6087631 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameYersinia pseudotuberculosis YPIII 
KingdomBacteria 
Replicon accessionNC_010465 
Strand- 
Start bp3925031 
End bp3925474 
Gene Length444 bp 
Protein Length147 aa 
Translation table11 
GC content49% 
IMG OID641598646 
Producttype VI secretion system lysozyme-related protein 
Protein accessionYP_001722282 
Protein GI170025777 
COG category[S] Function unknown 
COG ID[COG3518] Uncharacterized protein conserved in bacteria 
TIGRFAM ID[TIGR03357] type VI secretion system lysozyme-related protein 


Plasmid Coverage information

Num covering plasmid clones39 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGATATTT CAGCACCGAT ACTTTTTGAC AAATTAAGTC TCCGCCATGA ACACGTTCGC 
TTACCTCATT GGCGTGAAGT GATTGTGCGC GATATTGAAT CTTTATTGAA TGACTCCGCA 
CACAGTGCCC GGTTGAAGCT AAAAAAGTAT CCGCATTGTG AGGCTTCCGT ATTGAATTAC 
GGCCTGCCTT CGCTCAGCCA GCAGGTTCCG GTAATCACCG ACTTGCTGGA ACTGGCCAGA 
CATATACAGC GGATCATCGC CACGTTTGAG TCACGCCTGG ATCCGCGCTC AATAAAAGTG 
GTGCCGCTGA TTAATAAAGG CGAAACCTGG GTGTTAGCCA TCCTGTTTGA CATTCATGCC 
CGGTGCAACC TACCGGGCGA AGAGCACTTG GTCAATTTAC GCATCGCGCT CGATTACTCC 
TATGGAATGG TTCGCGTTCT TTAA
 
Protein sequence
MDISAPILFD KLSLRHEHVR LPHWREVIVR DIESLLNDSA HSARLKLKKY PHCEASVLNY 
GLPSLSQQVP VITDLLELAR HIQRIIATFE SRLDPRSIKV VPLINKGETW VLAILFDIHA 
RCNLPGEEHL VNLRIALDYS YGMVRVL