Gene YPK_3561 details

Gene Information

• Locus tag: YPK_3561
• ID: 6089674
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Yersinia pseudotuberculosis YPIII
• Kingdom: Bacteria
• Replicon accession: NC_010465
• Strand: -
• Start bp: 3923154
• End bp: 3924998
• Gene Length: 1845 bp
• Protein Length: 614 aa
• Translation table: 11
• GC content: 52%
• IMG OID: 641598645
• Product: type VI secretion protein
• Protein accession: YP_001722281
• Protein GI: 170025776
• COG category: [S] Function unknown
• COG ID: [COG3519] Uncharacterized protein conserved in bacteria
• TIGRFAM ID: [TIGR03359] type VI secretion protein, VC_A0110 family

Plasmid Coverage information

• Num covering plasmid clones: 26
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCCCAACG AAAGTTTTCT GGCTCTATAC AACGAAGAGT TGCGTTATCT GCGTGAAGAT 
GGGCAGCGCT TCGCTCATAT GCATCCGCAA GTCGCCCAAC ACCTTGGGTT ACATGCTGAT 
GGTGTGCTCG ATCCTTTCGT CGAACGGCTC CTTGAAGGCA CCGCTTTCTT GAGTTCCCGT 
ATCCAACAGC GTTTGAACAA CGAGCATCCA GAGTTTGCTT TGCAAATGCT TGGGCGTTTG 
GCCCCACTTT GGTATACACC CCTGCCGTCG ATTGCCACCA TTGCCATGGT TCCGGATCTT 
ACGTCACCGC AATGGCACTC GCGCGTCGTA TTGCCTAAAG GTAGCCGCGT GACATTGAGT 
GACAGTTCGC TGAACAACCG GTTGGCGAAT TTCTCTACTG GCCGCACGCT GAAAATACAG 
CCATTGGTCA TTGAAAATGC CGAGTGTGCC AGCACGCCAC CGGCGTATTT ACCGCTCTCT 
GTGGCTTCAC AATTACAAGC TGGTCAGGCC CATCTGCGCT TGCGTCTGAC CACTCAAGGT 
GTCGCGTCTT TATCTGAGCT GGATTTCGCC CCGATGAACC TGACGCTGGC GGGGGGAATA 
ATTCAGTCAA ATCAGTTAAT CACGACACTG TTGAATAACA CCTTACATAT TGTTTTGTGG 
GCCAACACGG ATGGGAAACC GCTGGTCAAA GTTCTTACCA AAGAACATCT TCGCCAGGGA 
GGGCTGGATG AACAAGAGGC GCTTTTACCT GTTGCGATCA GCGAAATGCC TGGAAACCGT 
TTGCTACGAG AATATTTTGC TGCTCCTTCG CGTTTTTTCG ATCTGGAACT GCATGGCCTC 
AACGACTTCC TGCAACAAGG GGACGGCATT CATACCTTTG AGGTGCTGTT TGTACTGGAT 
CAGCGCCCCC TACATTTGAT TGATAGGGTC ACTGGCAATG ACTTCCGACT CTTCGCCACA 
CCTATTATTA ACCTGTTCAA ACGCCGTTGT AGCCCGGTGC TGATTAATGG TGAACACACC 
GAATATCCCG TCATTGTTGA CCCCCTGAAC CCCCGCTTGT ACGAAGTCCA TCATGTAATC 
GGGGTCAACG GTTTGTTGAG CGAAGGGGGG AGCGTGCAGT TTTCTTCCCT TCATGGTCAT 
GCCCGTTTTG ATGATGACGA TAAAGTGGCG GGTTACAGCA TTCGCCGTCG CCGCGACTTC 
ACGGATAAAA ATCATCAGAA AAATTCACCT TTACCTCATG ACAGCTTATT CATTGCCCTT 
TCACCGGGGA CCAGCGGGAT AGATATTGAT CACGTCAAGT CGCTGTCGAT TGAAGCCATG 
GTGTGCGAAC GCCACTTAAT TCCCAGCCAA TTACAGCATC CGGAATTCAA GCTGGAAATT 
GCCCTGCCAG TGGGGCAGAT CGAAATGCTG CGTCACCCGG CAAAACCACA GGGTGTGCCG 
AATATTGATC AAGCCTGGCG GGCGTTACAA CTGATTGCCA ACAATCCGCT GCGTTATGCG 
CTGCCGGATG TCACCGATTG TTCGACGCTG CTAAAAGATT GGCTGTCGAT ATTTTGTCAG 
CATGAAGAGG CGAGCCAGCA TAAGAGGATC ACTAGCCTGA CTCACGCCAG TGTGGCGCAT 
AATTTTGAAC GTCATACCGC TCCGGGGCCG ATCGCCTGGA GCCGGGGGGT TGAAGCCACA 
CTGGATTTCA ACAGCAGCCA CCACAGTGAT AAAGGTGCAT TCCTCTTTGC GCGGATCCTG 
CATCACGCGC TGTCAGAATA TTGTGAATTA GGGCAGACCC TGAGGTTACA CATGCAGGTT 
GATGGTGAAA CCTTCGCCAA ATGGGGGCCT GTCAACTATG GCTAG 

 

Protein sequence

MPNESFLALY NEELRYLRED GQRFAHMHPQ VAQHLGLHAD GVLDPFVERL LEGTAFLSSR 
IQQRLNNEHP EFALQMLGRL APLWYTPLPS IATIAMVPDL TSPQWHSRVV LPKGSRVTLS 
DSSLNNRLAN FSTGRTLKIQ PLVIENAECA STPPAYLPLS VASQLQAGQA HLRLRLTTQG 
VASLSELDFA PMNLTLAGGI IQSNQLITTL LNNTLHIVLW ANTDGKPLVK VLTKEHLRQG 
GLDEQEALLP VAISEMPGNR LLREYFAAPS RFFDLELHGL NDFLQQGDGI HTFEVLFVLD 
QRPLHLIDRV TGNDFRLFAT PIINLFKRRC SPVLINGEHT EYPVIVDPLN PRLYEVHHVI 
GVNGLLSEGG SVQFSSLHGH ARFDDDDKVA GYSIRRRRDF TDKNHQKNSP LPHDSLFIAL 
SPGTSGIDID HVKSLSIEAM VCERHLIPSQ LQHPEFKLEI ALPVGQIEML RHPAKPQGVP 
NIDQAWRALQ LIANNPLRYA LPDVTDCSTL LKDWLSIFCQ HEEASQHKRI TSLTHASVAH 
NFERHTAPGP IAWSRGVEAT LDFNSSHHSD KGAFLFARIL HHALSEYCEL GQTLRLHMQV 
DGETFAKWGP VNYG