| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YPK_3559 |
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| Symbol | |
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| ID | 6087462 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Yersinia pseudotuberculosis YPIII |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010465 |
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| Strand | - |
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| Start bp | 3919572 |
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| End bp | 3922160 |
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| Gene Length | 2589 bp |
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| Protein Length | 862 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 641598643 |
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| Product | type VI secretion ATPase |
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| Protein accession | YP_001722279 |
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| Protein GI | 170025774 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0542] ATPases with chaperone activity, ATP-binding subunit |
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| TIGRFAM ID | [TIGR03345] type VI secretion ATPase, ClpV1 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGTATCAAC GCGAACGTCT TTTTAATCGA TTGGGCACTT TTGCCTATAA AACTTTTGTT
GAAGCCACCC GTCTTTGCCG CAGTTATCGG CATGAGTATG TGGAGCTTGA ACATTGGTTA
AAAATTCTCA TGGATCAACA GCGTGGGGAT ATTCCTGCTC TACTGACGCA TTACGGACTG
AGCCAGACGG TTATCTCCAC GCAATTGGAT CGCATTATTC AGCATATGCC CGTCACCAAA
GCATCGGTGC AGGATTTATC ATCACGCTTG GAGTCCGTGG TCGAAGGCGG ATTGGTGTTG
AGCCAATTGA TGGCGTCACC TTCTCCTATC CGTACCTCGC ATATTTTACT GGCACTATTA
CAGGATACCC AGCATCAGCG CTGGTTATAC CGCCTGTGCG ATGAATTCAA AAAGCTGCCG
GTCCCACAGG TTGCAGAGGA ATATGAAGGC CTATTAGTTA ACTCCATTGA ACAGACCAGC
GAGGTTCAAA GAGGCGACGC ATTAGTGACG GAAACGGACA GCAGCTCATC AAAAGAAGCG
CATGCGGCAT TGAACAAATG GTGTAACGAC CTTACCCAGC AAGCCCGTGA CGGTGAGATT
GACCCCGTTA TTGGTCGTGA AGCAGAACTG CGTCAAGTGA TTGATATTTT ACTCCGTCGC
CGTCAGAACA ACCCTATTTT GGTTGGGGAA GCGGGGGTCG GTAAAACGGC GGTGGTTGAA
GCGCTAGCGC GAAAACTGGC CAGTGGCGAT GTCCCTCCGC TGTTGCAAGG GGCGCGTCTG
CTTTCTCTGG ATTTGGGGAG GATGCAAGCC GGTGCCAGTA TGCGCGGTGA ATTTGAATCA
CGTCTTAAAT CCCTGATCGA TGGCATCAGC CAATCGGATA CCCCGGTTAT TCTGTTTTGT
GATGAAGCCC ATACGTTGGT GGGGGCAGGC GGGCAGGCGG GCACGGGGGA TGCGGTCAAC
CTGCTTAAAC CGATGTTGGC GAGGGGCGCA TTGCGCATGA TCGCCGCCAC CACCTGGTCA
GAGTATAAAC AGTTTATTGA ACCTGACGCC GCGCTGACCC GGCGTTTCCA GCGGGTATTG
ATTGGCGAGC CAAACGAATC TACCGCCGTC GATATGCTAC GGGCGATTGC GCCACATTTT
GCTCAACATC ATAACGTCAC TATCCGCGAC GGTGCCATTC ACGCGGCGGT GCGCCTGTCA
TTACGCAACC TGCCTTCCCG GCAGTTGCCC GATAAAGCCA TCAGTCTGCT CGACACCGCT
TGCGCGCGGG TCGCGCTCAG CCAATATGCC CAACCACAGG CGATTGAACA GTTATCGGCC
CAACTGGATG TGCTCAAAAC CGAGCATCAA TATCTGGTAC GGGAGAAGCA ACTGGGCGAA
GCGGTTGATC AACGGCTAGA TGACGTTCAG ACACAGATCC AAGCGTTTGA ACATGAACTA
ACCGCCTTGC AAAGCCGCCA TCTGCATGAG CAACAGCTAG TGAGGGAGGT CCTGCCGGAG
GGAGAAGGCA GTGGCATGAT GACGGAAAAT GCCCGCTGGG GTGAACTGAT GGCGTTACAG
GAAGCGTCGC CACTGGTCTA TCCATGGGTT GATGAGCAGA GCATCGCCGC GGTGCTTTCC
GATTGGACCG GGATCCCGTC CGGCAAAATG TTGCAGGACG ATATTGAATG CGTCCTGAAT
CTTGAACAGC GTCTCGGTGA TCATATTTTC GGGCAACGCA ACGCTATCAA AGAGATTTCG
CAGGCGATAC GTATTGCTCG GGCGGGCATC CAGTCTCAGG AGCGGCCACT CGGGATCTTC
CTGCTGGCGG GGTCAACCGG TACGGGCAAA ACAGAAACGG CCAATGTACT GGTCGAAACC
TTGTATGGCG GTGCTCATAA CCTTATTACC TTCAATATGA GTGAGTTCCA AGAGGCGCAT
ACCTTATCCA CACTGAAAGG CGCACCTCCG GGCTATGTCG GCTATGGCAA GGGGGGGAAA
TTAACCGAAG CGGTAAGACG CAAACCTTAT TCGGTCATCC TGCTTGATGA GTTTGATAAA
GCTCACGCCG ATATTCAGGA CGCCTTTTAT CAGGTCTTCG ACAAAGGGTG GATGGAAGAT
GCCGAAGGGC GTCGGGTCAG TTTCCGCCAG TGTTTCATCT TACTGACCTG TAATCAGGGC
GCGGAAGAGA TCGAACAGGC TTACCTCACC GCCAACGATA TCAAACCCGG TGCATTAAAA
CCGTTGGTAT ACGACGCCCT GTTGCGCCGC TTTGCGCCAG CGCTGTTAGC CAGGGTCAAT
ATCATTCCTT ATATCCCATT AGATCAGGAC GCTCTGGCAC AGATCGCCTC TCATCATCTT
GCGCGCTTAC AAACGCGCCT GTGGGATGAA ATTGGTGCCA CTTTGGTGAC CGAGGGGGAT
ATCCCCGGCT GGATCGCCTC ACGGGTTTGC AGCCATCCGA ACCATGGTCG TGCGGTGGAA
GAACTCTTGC GTCAAACCTT ACTTCCCGCT GTTGGCAATG AAGTGTTGAA GCGTCGCCAT
GAGGCTGAAC CGCTGAGAGA GATACGCCTG ATTGTTGAGG AGACAGAACT GAGTATTGAG
TTCGCGTAG
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| Protein sequence | MYQRERLFNR LGTFAYKTFV EATRLCRSYR HEYVELEHWL KILMDQQRGD IPALLTHYGL
SQTVISTQLD RIIQHMPVTK ASVQDLSSRL ESVVEGGLVL SQLMASPSPI RTSHILLALL
QDTQHQRWLY RLCDEFKKLP VPQVAEEYEG LLVNSIEQTS EVQRGDALVT ETDSSSSKEA
HAALNKWCND LTQQARDGEI DPVIGREAEL RQVIDILLRR RQNNPILVGE AGVGKTAVVE
ALARKLASGD VPPLLQGARL LSLDLGRMQA GASMRGEFES RLKSLIDGIS QSDTPVILFC
DEAHTLVGAG GQAGTGDAVN LLKPMLARGA LRMIAATTWS EYKQFIEPDA ALTRRFQRVL
IGEPNESTAV DMLRAIAPHF AQHHNVTIRD GAIHAAVRLS LRNLPSRQLP DKAISLLDTA
CARVALSQYA QPQAIEQLSA QLDVLKTEHQ YLVREKQLGE AVDQRLDDVQ TQIQAFEHEL
TALQSRHLHE QQLVREVLPE GEGSGMMTEN ARWGELMALQ EASPLVYPWV DEQSIAAVLS
DWTGIPSGKM LQDDIECVLN LEQRLGDHIF GQRNAIKEIS QAIRIARAGI QSQERPLGIF
LLAGSTGTGK TETANVLVET LYGGAHNLIT FNMSEFQEAH TLSTLKGAPP GYVGYGKGGK
LTEAVRRKPY SVILLDEFDK AHADIQDAFY QVFDKGWMED AEGRRVSFRQ CFILLTCNQG
AEEIEQAYLT ANDIKPGALK PLVYDALLRR FAPALLARVN IIPYIPLDQD ALAQIASHHL
ARLQTRLWDE IGATLVTEGD IPGWIASRVC SHPNHGRAVE ELLRQTLLPA VGNEVLKRRH
EAEPLREIRL IVEETELSIE FA
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