| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YPK_3558 |
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| Symbol | |
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| ID | 6087794 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Yersinia pseudotuberculosis YPIII |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010465 |
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| Strand | - |
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| Start bp | 3917120 |
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| End bp | 3919468 |
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| Gene Length | 2349 bp |
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| Protein Length | 782 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 641598642 |
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| Product | type VI secretion system Vgr family protein |
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| Protein accession | YP_001722278 |
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| Protein GI | 170025773 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3501] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR01646] Rhs element Vgr protein
[TIGR03361] type VI secretion system Vgr family protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.125148 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAATTAA TTGAGATAGA GAATGAGGTT TTATCGGGCC AGGATGCTTT TCCTCTCTCC
TTCAAGACGC AGGAAAAAGT GTCAGGGAAT CCATCCTACC AACTGGTATT TCAGGTAGCA
GAAGCGGACC TCGATCTGGT CAGTTTGCTG GGGGAAATCA TCAAAGTCAG GATTGAGTTA
CCTGACTCAG CCGGCTACCG GACCTTTTTT ACCTATGTGA TCGCCGGTGC TGATGAAGGG
CAACGGCAAG ACAAATTTGT TTACAGCCTG GAACTGAGTA CCTGGACGTG GTTTTTGATG
CAAAACCGCA ACTGCCGGAT ATTTCAGGAC CTGAATATTA TCGATATTAT CGAACAGGTA
TTTTCCAAAT ATAACTTTGC GGATTACCGT TTTGATATTG TCGGTAACTA TCGGTTACGC
GAGTACTGCG TACAGTTTGC AGAAACCGAT TTCGACTTTG TTAATCGTCT GATGGAAGAC
GAAGGCGTTT GGTATTACTT CGAACATAAC GAAGATAAGC ACACGCTGGT CATGACAGAT
CAGCAACAAT TCCCTGTATT GGAAGGGCAT TATGCAGAAC TGAGTTTCCT GCCTGACAGT
GAAGAGATGC GCGCCATCCG TGAGGGGATA CAGCGTATTC AACGCTCACA ACGCATCCAC
TCCAGCGAAA TTGTCTTACG TGACTTCGAT TTCCTTAATC CACGCAATAC ATTACAAACC
CATATCGAAG AAAGCCGCCA ACACCTGCAA GGCGTACCAC TGGAATGGTA TGACTACGCG
GCGGGTTACA CCGATCCCCA GCATGGTGAG AGCATCGCCC GTTTACGCCT TGAAGCTATA
CAGAGTAATG GGCAGCTCTT GTCTGGTGAA AGTAATGCCA CAGGATTAGT GCCAGGGCGC
TCTTTTGCTC TGGTACAGCA CCCTGATAAC AACCGTAATC GGGGATTCAA ACTGATCAGT
TGTGACTACA GTTTTGTCCA GGATGGGCCG GACAGTGCGA GCCAGGGACG TAATGTCGCC
TGTAAGTTTA AGGCATTGAA TGATGACGTC GTTTATCGTC CACAATGTGT CACGCCACCG
CCAAAGGTCC CTGGTGTGCA AAGTGCCACA GTGGTCGGTG CGCGTGAATC AGAAGTGCAT
ACCGATAAGT TCGCCCGTAT TCGCGTTCAC TTTCACTGGG ATCGTTATAA AACCACCGAA
GATGATAGCT CCTGCTGGAT CCGCGTTGTA CAGGCGTGGG CCGGTAAAGG CTGGGGCGTC
CTGGCGATGC CTCGGGTCGG GCAAGAAGTG CTGGTCAATT ACGTTGACGG CGACCTTGAT
CGCCCGATGG TGACCGGGAT CGTCTACAAC GGTGAGAACC CACCGCCTTA CCGTTTACCT
GACCACATTA ACTACTCCGG TTTTGTCTCA CGCTCACTGC GCTTTGGTCA GCCACAACAC
GCCAGCCAGC TTACCTTCGA TGATAATCGG GGCAATGAGC GGATCATGCT ACATGCTGAG
CGCGACTTAC AAAGAACGGT TGAACGTAAC AGTGCGACGG CCGTCGGTCA GGATAAATAC
GACACGGTGG AACGGACGGC CACGGAGTGG ATCAACAACC ATATCTCCTA CAAAGACTTC
AGTTTCTCGG TGACGGGCAT GAGTGTCTCC GCGACGGGCA TCAGTGTCTC GACAACGGGA
ACGAGCTTAT CTGTCACCGG CATGAGCACC AGCGTCACGG GTGTCAGTGT GGGTTTCACC
TTGATAGATA CCTCCTTTAC GGGTGTGAGC ACATCGTTTA CCGGTGTCGG TACCTCCTTC
ACCGGGGCCA GCAACTCGCT AACCGGTGTC AGCAACTCGA TGACTGGGTG TAGTTCCTCG
TTTACCGGTA CTAGCAATAG CATGACAGGC AGTAGCCATA GCATGACCGG CATGAGCACC
AGCATCACCG GGCATAGCAT GAGTCAGACG GGTTCCAGTA GCAGCATCAC CGGTGACAGT
ACCTCCTTTA CCGGCAGCAG CGTCAGCAGT ACGGGCAGCA GCGTCAGTAC GACCGGTGTC
AGTACCAGCA CTACGGGGAG TAGCACCTCG ACTACCGGTT GTAGCGTCAG TACTACGGGT
AGTAGCACCT CGACTACCGG TAATTCAGTC AGCATGACCG GTAACAGCAC CAGTACCACG
GGATGCAGTA TTTCCACGAC GGGCAGCAGT ATTGGGACGG TAGGAAGCAG TATCAGCACC
ACGGGCAGTA GCGTCAGTAC CACCGGTAGC AGTATCAGCA CCACGGGATT ATCCGTCAGT
TATACCGGCG CTCAATATTC CGATGTGGGT GTCGATCTGA AAACCGTTGG CATGCAAAGC
AAAAACTGA
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| Protein sequence | MQLIEIENEV LSGQDAFPLS FKTQEKVSGN PSYQLVFQVA EADLDLVSLL GEIIKVRIEL
PDSAGYRTFF TYVIAGADEG QRQDKFVYSL ELSTWTWFLM QNRNCRIFQD LNIIDIIEQV
FSKYNFADYR FDIVGNYRLR EYCVQFAETD FDFVNRLMED EGVWYYFEHN EDKHTLVMTD
QQQFPVLEGH YAELSFLPDS EEMRAIREGI QRIQRSQRIH SSEIVLRDFD FLNPRNTLQT
HIEESRQHLQ GVPLEWYDYA AGYTDPQHGE SIARLRLEAI QSNGQLLSGE SNATGLVPGR
SFALVQHPDN NRNRGFKLIS CDYSFVQDGP DSASQGRNVA CKFKALNDDV VYRPQCVTPP
PKVPGVQSAT VVGARESEVH TDKFARIRVH FHWDRYKTTE DDSSCWIRVV QAWAGKGWGV
LAMPRVGQEV LVNYVDGDLD RPMVTGIVYN GENPPPYRLP DHINYSGFVS RSLRFGQPQH
ASQLTFDDNR GNERIMLHAE RDLQRTVERN SATAVGQDKY DTVERTATEW INNHISYKDF
SFSVTGMSVS ATGISVSTTG TSLSVTGMST SVTGVSVGFT LIDTSFTGVS TSFTGVGTSF
TGASNSLTGV SNSMTGCSSS FTGTSNSMTG SSHSMTGMST SITGHSMSQT GSSSSITGDS
TSFTGSSVSS TGSSVSTTGV STSTTGSSTS TTGCSVSTTG SSTSTTGNSV SMTGNSTSTT
GCSISTTGSS IGTVGSSIST TGSSVSTTGS SISTTGLSVS YTGAQYSDVG VDLKTVGMQS
KN
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