Gene YPK_3542 details

Gene Information

• Locus tag: YPK_3542
• Symbol: tbpA
• ID: 6087861
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Yersinia pseudotuberculosis YPIII
• Kingdom: Bacteria
• Replicon accession: NC_010465
• Strand: +
• Start bp: 3894955
• End bp: 3896031
• Gene Length: 1077 bp
• Protein Length: 358 aa
• Translation table: 11
• GC content: 49%
• IMG OID: 641598626
• Product: thiamine transporter substrate binding subunit
• Protein accession: YP_001722262
• Protein GI: 170025757
• COG category: [H] Coenzyme transport and metabolism
• COG ID: [COG4143] ABC-type thiamine transport system, periplasmic component
• TIGRFAM ID: [TIGR01254] ABC transporter periplasmic binding protein, thiB subfamily; [TIGR01276] thiamine ABC transporter, periplasmic binding protein

Plasmid Coverage information

• Num covering plasmid clones: 30
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGATAACGA CTGTATCATC ACGGATACCA ATGTTAACTA CCGCCTCAGA TACCTTTGCC 
ACCTTTATGT TCAAGGAGTG CAAAGTGTTT AAACACATTA TTTCCTGCTT ATTACTGATA 
TCAGCCACCT CCGCGCTTGC CGCAGAAAAA CCTACGCTGA CGGTCTATAC CTACGACTCC 
TTTGCTGCTG ACTGGGGCCC AGGCCCGGCG ATTAAGCAGG CCTTTGAAGC TGAATGCGAT 
TGCCAGCTAA AATTTGTGGC ACTGGAAGAT GGCGTTTCAC TGCTGAACCG CCTGCGGATG 
GAAGGTAAAA ACAGCCAGGC CGATGTGATT TTAGGGTTGG ATAACAATCT GGTACAGGCG 
GCAGAACAAA CTGGCTTGTT TACCCCAAGC CCGGTTGATA CCCGTAATCT GACCCTACCA 
GAGCCGTGGC AGAATAAGAC ATTTGTCCCT TACGATTATG GCTATTTTGC TTTTGTGTAT 
AACAAAGAAA AACTGAAAAA CCCGCCAAAA AGCCTGCACG AATTAATCAG CAGTAAAGAA 
CCGTGGAAAG TGATTTATCA AGACCCACGG ACCAGCACTC CAGGTCTGGG TCTGATGCTG 
TGGATGCAAA AAGTTTATGG CGATCAAGCC CCGCAAGCAT GGCAACAACT GGCGCAGAAA 
ACGGTCACGG TCACCAAAGG CTGGAGCGAG GCGTATGGCT TGTTCCTCAA GGGGGAAGCG 
GATTTAGTGC TGAGCTACAC CACCTCTCCG GCTTATCATT TAATTGCAGA AAAGAATAAC 
AACTATGCAG CTGCCGATTT CAGTGAAGGC CACTATTTAC AAGTAGAAGT CGCCGGCCAA 
CTGGCCGCCA GCAAACAACC TGAACTGGCG CAGCGCTTTA TGCAATTTAT CGTGACCCCT 
GCGTTCCAAA ACCACATTCC AACCGGCAAC TGGATGTATC CAGTGATCAA AATGGATCTA 
CCCGCCGGGT TCGAGACACT GACCGTGCCA CAAACAGCGT TGCAATTTGA TGCTAAAGAC 
GTGGCGGATA ACCGCAGTAA ATGGATTCAG GCATGGCAAT CCGCCGTCAG CCGTTAA 

 

Protein sequence

MITTVSSRIP MLTTASDTFA TFMFKECKVF KHIISCLLLI SATSALAAEK PTLTVYTYDS 
FAADWGPGPA IKQAFEAECD CQLKFVALED GVSLLNRLRM EGKNSQADVI LGLDNNLVQA 
AEQTGLFTPS PVDTRNLTLP EPWQNKTFVP YDYGYFAFVY NKEKLKNPPK SLHELISSKE 
PWKVIYQDPR TSTPGLGLML WMQKVYGDQA PQAWQQLAQK TVTVTKGWSE AYGLFLKGEA 
DLVLSYTTSP AYHLIAEKNN NYAAADFSEG HYLQVEVAGQ LAASKQPELA QRFMQFIVTP 
AFQNHIPTGN WMYPVIKMDL PAGFETLTVP QTALQFDAKD VADNRSKWIQ AWQSAVSR