| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YPK_3489 |
|---|
| Symbol | |
|---|
| ID | 6089624 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Yersinia pseudotuberculosis YPIII |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010465 |
|---|
| Strand | - |
|---|
| Start bp | 3832318 |
|---|
| End bp | 3833742 |
|---|
| Gene Length | 1425 bp |
|---|
| Protein Length | 474 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 641598573 |
|---|
| Product | dihydrolipoamide dehydrogenase |
|---|
| Protein accession | YP_001722209 |
|---|
| Protein GI | 170025704 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1249] Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes |
|---|
| TIGRFAM ID | [TIGR01350] dihydrolipoamide dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.71639 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTACTG AAATTAAAAC TCAGGTCGTG GTACTTGGGG CAGGTCCAGC AGGGTACTCT
GCTGCTTTTC GTTGTGCGGA TTTAGGGTTA GAAACCATTC TGGTTGAACG TTACTCCACT
CTGGGTGGGG TTTGCCTGAA TGTGGGTTGT ATCCCTTCCA AGGCACTGTT ACACGTTGCC
AAAGTGATCG AAGAAGCCAA AGCGCTGGCT GAACATGGTA TCGTTTTTGG CGAGCCTAAA
ACTGATATTG ATAAAGTCCG TGTCTGGAAA GATAAAGTTA TCAATCAGTT GACCGGTGGT
TTGGCAGGTA TGGCTAAAGG CCGTAAAGTC AAAGTAGTGA CTGGTTTTGG TAAATTTACC
GGTGCGAACA CCTTAGTGGT TGATGGTGAG AATGGTCCAA CAACCATTAA CTTCGATAAC
GCTATTATCG CGGCGGGTTC TCGCCCAATT CAACTGCCAT TCATTCCTCA TGAAGACTCA
CGTATTTGGG ATTCAACTGA CGCACTGGCA TTGAGAACGG TTCCTGAGCG CTTGTTGGTG
ATGGGCGGTG GTATCATTGG TCTGGAAATG GGGACCGTTT ACCACGCACT GGGTTCTAAG
ATTGACGTGG TCGAAATGCT TGATCAGGTG ATCCCCGCAG CAGATAAAGA CGTGGTGAAA
GTCTTTACCA AGCGGATCAG CAAGCAGTTC AATCTGATGC TGGAAACCAA AGTGACAGCG
GTAGAAGCCA AAGAAGACGG TATCTATGTC ACGATGGAAG GCAAAAAAGC GCCAGCAGAG
CCACAACGCT ATGATGCGGT GTTGGTTGCG ATTGGCCGCG TGCCTAACGG TAAGTTGCTG
GATGCGGGTC AGGCGGGTGT TGAAGTTGAT GATCGTGGCT TTATCCACGT TGATAAGCAA
CTGCGCACCA ATGTGCCACA CATTTTTGCT ATCGGTGACA TCGTGGGTCA GCCAATGCTG
GCGCATAAAG GTGTCCACGA AGGCCATGTT GCCGCTGAAG TTATCGCAGG CATGAAGCAC
TATTTCGATC CGAAAGTTAT TCCATCGATT GCGTACACTG AACCAGAAGT CGCATGGGTT
GGTTTGACCG AAAAAGAAGC AAAAGAGAAA GGCATCAGCT ACGAAACCTC CACCTTCCCG
TGGGCGGCAT CGGGCCGTGC TATCGCTTCT GATTGCGCAG ATGGTATGAC TAAACTGATT
TTCGATAAAG AAACTCACCG TATCATTGGT GGTGCGATTG TCGGTACTAA CGGTGGCGAA
CTGTTAGGTG AAATCGGTCT GGCCATTGAG ATGGGTTGTG ATGCAGAAGA TATCGCATTG
ACCATTCATG CTCACCCAAC ATTGCATGAA TCAGTGGGCC TGGCGGCGGA AATCTACGAA
GGTAGCATTA CTGACCTGCC TAACCCGAAA GCGAAAAAGA AATAA
|
|---|
| Protein sequence | MSTEIKTQVV VLGAGPAGYS AAFRCADLGL ETILVERYST LGGVCLNVGC IPSKALLHVA
KVIEEAKALA EHGIVFGEPK TDIDKVRVWK DKVINQLTGG LAGMAKGRKV KVVTGFGKFT
GANTLVVDGE NGPTTINFDN AIIAAGSRPI QLPFIPHEDS RIWDSTDALA LRTVPERLLV
MGGGIIGLEM GTVYHALGSK IDVVEMLDQV IPAADKDVVK VFTKRISKQF NLMLETKVTA
VEAKEDGIYV TMEGKKAPAE PQRYDAVLVA IGRVPNGKLL DAGQAGVEVD DRGFIHVDKQ
LRTNVPHIFA IGDIVGQPML AHKGVHEGHV AAEVIAGMKH YFDPKVIPSI AYTEPEVAWV
GLTEKEAKEK GISYETSTFP WAASGRAIAS DCADGMTKLI FDKETHRIIG GAIVGTNGGE
LLGEIGLAIE MGCDAEDIAL TIHAHPTLHE SVGLAAEIYE GSITDLPNPK AKKK
|
|---|
| |