Gene YPK_3430 details

Gene Information

• Locus tag: YPK_3430
• Symbol: ispF
• ID: 6088957
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Yersinia pseudotuberculosis YPIII
• Kingdom: Bacteria
• Replicon accession: NC_010465
• Strand: -
• Start bp: 3763819
• End bp: 3764307
• Gene Length: 489 bp
• Protein Length: 162 aa
• Translation table: 11
• GC content: 48%
• IMG OID: 641598514
• Product: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
• Protein accession: YP_001722150
• Protein GI: 170025645
• COG category: [I] Lipid transport and metabolism
• COG ID: [COG0245] 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
• TIGRFAM ID: [TIGR00151] 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase

Plasmid Coverage information

• Num covering plasmid clones: 23
• Plasmid unclonability p-value: 0.554519
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCGGATCG GTCATGGTTT CGATGTTCAT AAATTTGGCG AGAATGGCAG TGGTCCACTC 
ATTATTGGTG GCGTGCGTAT CCCATATGAA AAGGGGTTAC TGGCCCATTC TGACGGCGAT 
GTTGCATTAC ATGCGGCCAC TGATGCGCTA TTAGGCGCTG CTGCATTAGG TGATATCGGG 
AAACTCTTCC CCGACACTGA CCCGGCATTT AAAGGCGCAG ATAGCCGAGG TTTACTGCGA 
GAAGCGTATC GCCGTATTCT GGCCAAAGGC TATAAATTGG GGAATCTGGA TATTACCATT 
ATTGCCCAGG CACCTAAAAT GGCACCGCAT ATTCCACAAA TGCGCGTTAA TTTAGCAGAA 
GACCTACAAT GTCATATGGA TGACATCAAC GTCAAAGCGA CCACCACGGA ACAGCTTGGT 
TTTACCGGGC GTGGTGAAGG TATTGCGTGT GAAGCGGTGG TTTTATTAGT TAACGTAGAA 
CAGGGTTAA 

 

Protein sequence

MRIGHGFDVH KFGENGSGPL IIGGVRIPYE KGLLAHSDGD VALHAATDAL LGAAALGDIG 
KLFPDTDPAF KGADSRGLLR EAYRRILAKG YKLGNLDITI IAQAPKMAPH IPQMRVNLAE 
DLQCHMDDIN VKATTTEQLG FTGRGEGIAC EAVVLLVNVE QG