Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | YPK_3429 |
Symbol | truD |
ID | 6087246 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Yersinia pseudotuberculosis YPIII |
Kingdom | Bacteria |
Replicon accession | NC_010465 |
Strand | - |
Start bp | 3762759 |
End bp | 3763808 |
Gene Length | 1050 bp |
Protein Length | 349 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 641598513 |
Product | tRNA pseudouridine synthase D |
Protein accession | YP_001722149 |
Protein GI | 170025644 |
COG category | [S] Function unknown |
COG ID | [COG0585] Uncharacterized conserved protein |
TIGRFAM ID | [TIGR00094] tRNA pseudouridine synthase, TruD family |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 0.291589 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGATATGG AAAACCTGAC CTGGCTACAC GGTAAACCTA CGGCGAGCGG TATTTTAAAA GCGAATCCGG AAGATTTTGT TGTCGTAGAG GATTTGGGAT TTGAACCGGA TGGGGAAGGT GAGCATCTGC TGGTTCGTAT TCGTAAAAAT GGCTGCAATA CCCAATTCGT TGCTGATTAT TTGGCGCGCT TTGCCAAACT TCATCCGCGG TTGGTGAGTT ATGCGGGGTT AAAAGACCGC CATGCGGTCA CCGAACAGTG GTTTTGTTTA CACTTGCCAG GAAAAGAAGC GCCAGATCTG GCCACCTTTG AGCTGGAAGG GTGTGAAGTA TTGGAAGCGG TGCGGCATAA AAGAAAATTA CGCATTGGTT CACTGAAAGG CAATGCGTTT ACCTTAGTAC TGCGCCATAT TACGGATCGC CAGGATGTGG AACAACGTTT ACAGCAAATA GCCGCCCAGG GCGTACCCAA CTATTTTGGT AGCCAGCGGT TTGGCCGTGG TGGTAATAAT CTGGTGCAGG CCCGTTTATG GGCGAATAAT GAAATTCGGG TAAAAGAACG CAGCAAACGT AGCTTTTATC TGTCGGCCAG TCGCAGCGCG ATGTTCAATC TGATTAGCAG TCACCGCTTG GCGCAACAAC TGTCGACGAC GGTACTGGAG GGTGATGCAT TACAATTATC CGGGCGTGGG AGTTGGTTTG TTGCTCAAGC GGATGAATTA GCCACGTTGC AACAGCGCGT TACTGCGGGT GAACTGAATA TCACCGCGCC TTTACCGGGG GACAGTGAAC TGGGTACCCA CGGTGAGGCA TTAGCCTTTG AACAGGCGTG TTTGGCAGAG CAAACTGAAT TACTGTCATT GATTAAGCGT GAGCGCGTTG AAGGTAGCCG CCGGGCAGTA CTGCTAAAAC CGCAGAATAT GATAAGCAAC TGGTGGGATG ATGTCACTCT TGAGCTGAGT TTCTGGCTCC CTGCGGGGAG CTTTGCGACC AGTGTAGTGA GGGAAATAAT GAACCAGGAT CGGGCTGATG ATACGGATAT TATTGAGTAA
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Protein sequence | MDMENLTWLH GKPTASGILK ANPEDFVVVE DLGFEPDGEG EHLLVRIRKN GCNTQFVADY LARFAKLHPR LVSYAGLKDR HAVTEQWFCL HLPGKEAPDL ATFELEGCEV LEAVRHKRKL RIGSLKGNAF TLVLRHITDR QDVEQRLQQI AAQGVPNYFG SQRFGRGGNN LVQARLWANN EIRVKERSKR SFYLSASRSA MFNLISSHRL AQQLSTTVLE GDALQLSGRG SWFVAQADEL ATLQQRVTAG ELNITAPLPG DSELGTHGEA LAFEQACLAE QTELLSLIKR ERVEGSRRAV LLKPQNMISN WWDDVTLELS FWLPAGSFAT SVVREIMNQD RADDTDIIE
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