| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YPK_3425 |
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| Symbol | |
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| ID | 6090883 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Yersinia pseudotuberculosis YPIII |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010465 |
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| Strand | - |
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| Start bp | 3759239 |
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| End bp | 3760237 |
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| Gene Length | 999 bp |
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| Protein Length | 332 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 641598509 |
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| Product | RNA polymerase sigma factor RpoS |
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| Protein accession | YP_001722145 |
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| Protein GI | 170025640 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02394] RNA polymerase sigma factor RpoS
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.43603 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCCAAA GTACGCTGAA AGTTAACGAG TTGCATGAAG ATGCTGATTT TGATGAGAAC
AGTACGGAAA CTGAGATTTT TGATGAAAAA GCATTAGTAG ATGATGAACC TACTGAAAGC
GAGTTAGCAG ACGATGAGTT GTTGGCGCAA GGTGTTACCC AGCGTGTGCT GGATGCGACG
CAACTCTATC TTGGTGAAAT CGGTTATTCG CCACTGCTAA CGGCCGAAGA AGAGGTTTAT
TTTGCCCGGC GTGCATTGCG CGGAGACGTA CCTTCACGTC GACGTATGAT TGAGAGTAAC
TTGCGGCTGG TGGTGAAGAT CGCCCGCCGT TACAGTAATC GCGGTTTAGC GCTGTTGGAT
CTGATAGAAG AGGGTAACCT CGGTTTGATC CGTGCGGTGG AAAAGTTTGA TCCTGAACGC
GGTTTCCGTT TTTCCACTTA CGCGACTTGG TGGATTCGCC AGACGATTGA ACGGGCGATT
ATGAACCAAA CCCGTACCAT CCGTTTGCCT ATCCATATCG TTAAAGAGTT AAACGTTTAT
TTACGTACAG CACGAGAGCT TTCTCATAAA TTGGATCATG AACCGAGCGC GGAAGAGATT
GCAGAGCAAC TCGACAAGCC GGTCGATGAC GTGAGCCGTA TGTTACGCCT TAACGAACGT
ATCACTTCTG TTGATACGCC TTTAGGCGGC GACTCAGAGA AAGCGTTGTT GGATATTCTG
TCTGACGAAA ATGAGAACGG TCCGGAAGAT ACAACACAAG ATGACGATAT GAAACAGAGT
ATCGTTAAGT GGTTGTTTGA GTTGAATGCA AAACAGCGCG AAGTGTTGGC CCGTCGTTTT
GGTCTGTTAG GATATGAAGC GGCAACATTG GAAGATGTTG GCCGAGAAAT TGGTTTGACA
CGCGAGCGTG TCCGCCAGAT TCAGGTTGAA GGCTTACGCC GTCTGCGGGA AATCCTGCAA
ACGCAAGGCC TGAGCATCGA GGCGTTGTTC CGCGAATAA
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| Protein sequence | MSQSTLKVNE LHEDADFDEN STETEIFDEK ALVDDEPTES ELADDELLAQ GVTQRVLDAT
QLYLGEIGYS PLLTAEEEVY FARRALRGDV PSRRRMIESN LRLVVKIARR YSNRGLALLD
LIEEGNLGLI RAVEKFDPER GFRFSTYATW WIRQTIERAI MNQTRTIRLP IHIVKELNVY
LRTARELSHK LDHEPSAEEI AEQLDKPVDD VSRMLRLNER ITSVDTPLGG DSEKALLDIL
SDENENGPED TTQDDDMKQS IVKWLFELNA KQREVLARRF GLLGYEAATL EDVGREIGLT
RERVRQIQVE GLRRLREILQ TQGLSIEALF RE
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