Gene YPK_3404 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagYPK_3404 
Symbol 
ID6089828 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameYersinia pseudotuberculosis YPIII 
KingdomBacteria 
Replicon accessionNC_010465 
Strand+ 
Start bp3736290 
End bp3737933 
Gene Length1644 bp 
Protein Length547 aa 
Translation table11 
GC content51% 
IMG OID641598488 
Producttartrate/fumarate subfamily Fe-S type hydro-lyase beta subunit 
Protein accessionYP_001722124 
Protein GI170025619 
COG category[C] Energy production and conversion 
COG ID[COG1838] Tartrate dehydratase beta subunit/Fumarate hydratase class I, C-terminal domain
[COG1951] Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain 
TIGRFAM ID[TIGR00722] hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha region
[TIGR00723] hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta region 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCAAACA AACCGTTCCA CTATCAGGAT CCCTTCCCGC TCAAGGAAGA TGATACTGAA 
TATTACCTTG TCAGTGATAA ACATGTCTCA GTTGCACAGT TTGAAGGACA CGACATCCTA 
AAAGTCGAGC CGGAAGCCCT GACCCTCCTC GCTCAACAGG CTTTCCACGA TGCCTCTTTC 
CTCCTGCGCC CCGCTCACCA AAAACAAGTT GCCGCCATTC TGGATGACCC GGAAGCCAGC 
GAAAACGATA AATATGTCGC CCTGCAATTC CTACGTAACT CTGAGATTTC GGCTAAAGGG 
ATTTTACCCA CCTGTCAAGA TACCGGCACC GCGATCATCA TGGGCAAAAA AGGCCAGCGG 
GTCTGGACTG GGGGTAACGA TGCCGAAGCG TTATCACGTG GGGTCTATAA CACCTTTATT 
GAAGATAACC TGCGCTATTC ACAAAACGCC GCGCTGGATA TGTATAAGGA AGTGAATACC 
GGTACCAACC TGCCAGCACA GATCGATCTA TACAGCACCG AAGGTGAAGA GTACAAATTC 
TTGTTTGTGA CTAAAGGCGG CGGTTCAGCC AATAAAACCT ATCTGTATCA GGAAACCAAA 
GCCCTGCTCA CACCGGGCAG GCTGAAAGCG TTTTTGGTCG AGAAAATGCG CACATTGGGT 
ACCGCGGCTT GCCCGCCTTA TCACATTGCC TTTGTCATCG GCGGTACCTC TGCCGAAAGT 
ACGCTGAAGA CGGTTAAACT GGCCTCGACC AAATATTACG ATGGCTTGCC GACCGAAGGG 
AATGAACACG GCCAAGCGTT CCGTGACACT GCGTTAGAGC AAGAATTGCT GGAAGCAGCA 
CAAGATTTAG GTCTGGGCGC GCAATTTGGC GGCAAATACT TTGCCCACGA TGTTCGGGTC 
GTTCGCCTGC CACGCCACGG AGCCTCCTGC CCGGTCGGCA TGGGGGTATC TTGTTCTGCT 
GACCGTAATA TCAAAGGCAA AATTAACCGC AAAGGCATTT GGTTGGAGAA ACTGGAACAG 
AATCCAGGGA AATATATTCC CGAACATTTG CGCCACAGCA CTGAAGGCCA AGTGGTTAAA 
ATTGATCTTA ACCGCCCGAT GCCTGAAATT TTAAAAGAGC TGTCACAGTA CCCGGTCTCC 
ACCCGCCTGT CGTTAAGCGG CACCATTATT GTTGGCCGTG ATATCGCCCA TGCCAAATTA 
AAAGAGCGGC TGGATAACGG TGAAGGCTTA CCACAATACA TTAAAGATCA TCCGATCTAT 
TACGCCGGAC CGGCCAAAAC CCCCGAAGGC TATGCTTCAG GATCACTCGG GCCAACCACC 
GCAGGGCGCA TGGACTCTTA CGTGGATCTG CTGCAATCCC ACGGGGGTAG CATGATCATG 
TTAGCCAAAG GCAACCGTAG CCAGCAAGTG ACCGACGCCT GCCATAAACA CGGGGGCTTC 
TATCTGGGCA GCATCGGTGG CCCGGCAGCG GTATTGGCGC AAAACAGTAT TAAGAGTCTG 
GAATGTGTGG AATATCCTGA ATTAGGGATG GAAGCCATCT GGAAGATTGA CGTGGAAGAC 
TTCCCAGCCT TTATTTTAGT TGATGATAAG GGCAATGATT TCTTCCAGCA GATCCAAGCG 
GCAAAATGCA ACCGTTGTGG CTGA
 
Protein sequence
MSNKPFHYQD PFPLKEDDTE YYLVSDKHVS VAQFEGHDIL KVEPEALTLL AQQAFHDASF 
LLRPAHQKQV AAILDDPEAS ENDKYVALQF LRNSEISAKG ILPTCQDTGT AIIMGKKGQR 
VWTGGNDAEA LSRGVYNTFI EDNLRYSQNA ALDMYKEVNT GTNLPAQIDL YSTEGEEYKF 
LFVTKGGGSA NKTYLYQETK ALLTPGRLKA FLVEKMRTLG TAACPPYHIA FVIGGTSAES 
TLKTVKLAST KYYDGLPTEG NEHGQAFRDT ALEQELLEAA QDLGLGAQFG GKYFAHDVRV 
VRLPRHGASC PVGMGVSCSA DRNIKGKINR KGIWLEKLEQ NPGKYIPEHL RHSTEGQVVK 
IDLNRPMPEI LKELSQYPVS TRLSLSGTII VGRDIAHAKL KERLDNGEGL PQYIKDHPIY 
YAGPAKTPEG YASGSLGPTT AGRMDSYVDL LQSHGGSMIM LAKGNRSQQV TDACHKHGGF 
YLGSIGGPAA VLAQNSIKSL ECVEYPELGM EAIWKIDVED FPAFILVDDK GNDFFQQIQA 
AKCNRCG