| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YPK_3362 |
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| Symbol | trmD |
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| ID | 6087921 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Yersinia pseudotuberculosis YPIII |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010465 |
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| Strand | - |
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| Start bp | 3688408 |
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| End bp | 3689148 |
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| Gene Length | 741 bp |
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| Protein Length | 246 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 641598441 |
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| Product | tRNA (guanine-N(1)-)-methyltransferase |
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| Protein accession | YP_001722082 |
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| Protein GI | 170025577 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0336] tRNA-(guanine-N1)-methyltransferase |
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| TIGRFAM ID | [TIGR00088] tRNA (guanine-N1)-methyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.293288 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGTGGATCG GTGTTATTAG CCTGTTTCCT GAGATGTTCC GCGCAATAAC CGATTACGGG
GTAACTGGCC GGGCAGTAAA AAATGGCCTG CTGAGCGTGC AGTGTTGGAG TCCTCGTGAC
TTCACCTACG ATCGGCATCG TACCGTGGAT GACCGCCCAT ATGGCGGAGG CCCGGGAATG
TTGATGATGG TGCAACCGTT AAGGGAAGCC ATTCATGCAG CAAAAGCAGC GGCAGGCGAG
GGAGCAAAGG TGATTTATCT GTCACCTCAA GGGCGCAAAC TGGACCAACA GGGTGTTTGC
GAACTGGCGA TGAATCAGAA AATGATTCTG GTTTGTGGCC GGTACGAAGG AGTTGATGAG
CGCGTAATCA AAACAGAAAT TGATGAAGAA TGGTCAATTG GCGATTACGT TCTCAGCGGT
GGCGAGCTGC CAGCAATGAC ATTGATTGAT TCAGTCTCCC GTTTTATTCC GGGCGTACTG
GGGCATCATG CCTCAGCGGA GGAAGATTCC TTTGTTGATG GGTTGCTGGA TTGCCCACAC
TACACTCGTC CTGAGGTGTT GGAAGGGATG GAGGTACCGC CAGTATTACT GTCAGGTAAC
CATGCCGAGA TTCGTCGCTG GCGCTTAAAG CAGTCGCTGG GCCGTACCTG GCTTAGAAGA
CCTGAACTTC TGGAAAGCCT AGCTCTGACT GACGAGCAAA TGGTGTTGCT GGCTGAGTTC
CAACGGGAAC ATAAGCCCTG A
|
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| Protein sequence | MWIGVISLFP EMFRAITDYG VTGRAVKNGL LSVQCWSPRD FTYDRHRTVD DRPYGGGPGM
LMMVQPLREA IHAAKAAAGE GAKVIYLSPQ GRKLDQQGVC ELAMNQKMIL VCGRYEGVDE
RVIKTEIDEE WSIGDYVLSG GELPAMTLID SVSRFIPGVL GHHASAEEDS FVDGLLDCPH
YTRPEVLEGM EVPPVLLSGN HAEIRRWRLK QSLGRTWLRR PELLESLALT DEQMVLLAEF
QREHKP
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