Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | YPK_3351 |
Symbol | rluD |
ID | 6090568 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Yersinia pseudotuberculosis YPIII |
Kingdom | Bacteria |
Replicon accession | NC_010465 |
Strand | - |
Start bp | 3677513 |
End bp | 3678490 |
Gene Length | 978 bp |
Protein Length | 325 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 641598430 |
Product | 23S rRNA pseudouridine synthase D |
Protein accession | YP_001722071 |
Protein GI | 170025566 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 0.11955 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCACAAC AAGTACAACT CAGCGCAACG GTGGCCGAAT CTCAACTCGG TCAACGGTTA GATCAGGCTT TGGCCGAATT GTTCCCAGAT TATTCAAGAT CTCGCATAAA AGAGTGGATT TTGGATAGTC GGGTTACAGT CAATGGTAAA AAAATCAACA AGCCTAAAGA AAAAGTGTTG GGTGGTGAGC TCGTCGCAAT TGACGCGCAA ATTGAGGAAG ATGCCCGTTG GGCGCCTCAA GAAATCCCAC TTGATATCGT GTATGAAGAT AACGATATTC TGGTTATTAA TAAACCCCGA GGTTTAGTTG TTCATCCTGG TGCTGGCAAT CCTGATGGCA CCGTGCTGAA TGCTTTGCTG CATTATTATC CAGAAATCAT GGATGTTCCT CGCGCAGGCA TTGTACATCG CTTGGATAAG GACACCACCG GATTGATGGT GGTTGCAAAA ACAGTCCCGG CACAGACCCG CTTGGTTGAA GCGTTGCAAG CACGTGAAAT TACACGTGAA TATGAAGCAG TCGCTATCGG TAATATGACC GCTGGCGGGA GAGTGGATGA GCCAATTTCT CGCCACTCGA CTAAACGCAC CCATATGGCA GTACATCCAA TGGGCAAACC GGCGACGACA CACTACCGCA TTATGGAGCA CTTCCGTGCC CATACCCGTC TGCGTCTGCG TTTGGAAACT GGCCGTACAC ACCAAATCCG TGTGCATATG TCTCATATTA ACCATCCGCT GGTGGGTGAT CAGCTCTATG GTGGCCGCCC GCGTCCGCCT AAAGGGGCGT CTGATTCCTT TATTGCCATC TTGCGTGGCT TTGATCGTCA GGCTCTGCAC GCAACCATGC TACGTTTGTA TCACCCAATC AGCGGTATTC AAATGGAATG GCATGCCGCA TTACCAGAAG ATATGGTTGA GCTGATTAAT GCGTTAAAAG CCGATACTGA AGAATTTAAA GATCAGATGG ATTGGTAA
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Protein sequence | MAQQVQLSAT VAESQLGQRL DQALAELFPD YSRSRIKEWI LDSRVTVNGK KINKPKEKVL GGELVAIDAQ IEEDARWAPQ EIPLDIVYED NDILVINKPR GLVVHPGAGN PDGTVLNALL HYYPEIMDVP RAGIVHRLDK DTTGLMVVAK TVPAQTRLVE ALQAREITRE YEAVAIGNMT AGGRVDEPIS RHSTKRTHMA VHPMGKPATT HYRIMEHFRA HTRLRLRLET GRTHQIRVHM SHINHPLVGD QLYGGRPRPP KGASDSFIAI LRGFDRQALH ATMLRLYHPI SGIQMEWHAA LPEDMVELIN ALKADTEEFK DQMDW
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