| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YPK_3338 |
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| Symbol | |
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| ID | 6088086 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Yersinia pseudotuberculosis YPIII |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010465 |
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| Strand | + |
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| Start bp | 3657645 |
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| End bp | 3658817 |
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| Gene Length | 1173 bp |
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| Protein Length | 390 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 641598415 |
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| Product | efflux pump membrane protein |
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| Protein accession | YP_001722060 |
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| Protein GI | 170025555 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | [TIGR00998] efflux pump membrane protein (multidrug resistance protein A) |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 0.615616 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGTGAAA GTGCGGGAGC CCAAGCCCCA CAACGACCGC AGAATAAAAA ACAGCAACGT
AAACGTGTAC TGCTGTTGCT GACGGCCATT TTTATTATGA TCGGGGTGGC TTACCTTATT
TATTGGTTCC TGGTGCTACG CCATCACCAA GAGACTGATA ATGCCTATAT TTCAGGCAAC
CAAGTCCAGA TTATGTCTCA AGTTCCCGGC AGTGTGGTCA GTGTTCATTT CGAAAATACG
GACTTCGTCA AAAGTGGCGA TGTGCTGGTG ACACTCGACC CCACCGATGC AGAACAGGCA
TTTGAGCAAG CGAAAACTGC CTTGGCAAAT AGCGTGCGCC AAACCCACCA GCTCATTATT
AACAGTAAAC AGTATCAAGC GAATATTGCG CTGAAAAAAA CGGAATTGAG CCAGGCACAA
AATGACCTGA AGCGTCGGGT GGTCCTGGGG GCTGCCGCAG TCATCGGCCG TGAAGAATTG
CAACACGCAC GTGATGCTGT TGAGGCGGCA CAAGCGTCGT TGGATATGGC AGTGCAGCAA
TATAACGCCA ATCAGGCGTT GGTCCTCAAT ACGCCATTGG AGAAACAACC GGCGATTGAG
CAGGCGGCCG CTAAAATGCG TGATGCCTGG CTCACCCTGC AGCGCACCAA AGTAGTTAGC
CCAATTAGCG GCTATGTCTC GCGTCGCAGT GTACAAGTGG GTGCTGAAAT CAGTAGTGGT
ACGCCGTTAA TGGCGGTGGT TCCGGCAGAT CAACTGTGGA TCGACGCTAA CTTCAAAGAA
ACTCAGTTGG TGAACATGCG AATTGGCCAA CCGGCGACTA TCGTGACCGA TTTTTACGGT
GATGATGTGG TTTATCAAGG GAAAGTGGTC GGTTTAGATA TGGGAACCGG CAGTGCCTTC
TCGCTACTAC CCGCGCAAAA TGCCACCGGT AACTGGATCA AAGTGGTCCA ACGCCTGCCA
GTACGAATTG CATTGGATGA GAAACAACTG AAGGAGCATC CGTTACGTAT TGGTCTGTCA
TCGCTGGTTA AAGTCGACAC CGCCAATACC GATGGACACG TTTTGGCACA AAACGTGCGT
AAAGAACCCG CGTTCATGAC CAATGCATTG TCATTAGATT TCGCGCCAGT TAATCAAATA
ATTAGCGATA TTATTCATGC AAACGCCGAT TAA
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| Protein sequence | MSESAGAQAP QRPQNKKQQR KRVLLLLTAI FIMIGVAYLI YWFLVLRHHQ ETDNAYISGN
QVQIMSQVPG SVVSVHFENT DFVKSGDVLV TLDPTDAEQA FEQAKTALAN SVRQTHQLII
NSKQYQANIA LKKTELSQAQ NDLKRRVVLG AAAVIGREEL QHARDAVEAA QASLDMAVQQ
YNANQALVLN TPLEKQPAIE QAAAKMRDAW LTLQRTKVVS PISGYVSRRS VQVGAEISSG
TPLMAVVPAD QLWIDANFKE TQLVNMRIGQ PATIVTDFYG DDVVYQGKVV GLDMGTGSAF
SLLPAQNATG NWIKVVQRLP VRIALDEKQL KEHPLRIGLS SLVKVDTANT DGHVLAQNVR
KEPAFMTNAL SLDFAPVNQI ISDIIHANAD
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