Gene YPK_3312 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagYPK_3312 
Symbol 
ID6090024 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameYersinia pseudotuberculosis YPIII 
KingdomBacteria 
Replicon accessionNC_010465 
Strand
Start bp3627596 
End bp3633760 
Gene Length6165 bp 
Protein Length2054 aa 
Translation table11 
GC content47% 
IMG OID641598389 
Productfilamentous haemagglutinin outer membrane protein 
Protein accessionYP_001722034 
Protein GI170025529 
COG category 
COG ID 
TIGRFAM ID[TIGR01901] filamentous haemagglutinin family N-terminal domain 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAACAGTA AATTGTACAA ACTTATTTTT TGTCGTCGGC TGGGCTGCTT AATTGCCGTG 
GGAGAATTTA CCCGATCATA TGGCCGAGCC TTTTCGTCGA AAGACGGTCA AACCGGCAAT
AATCAGCGCC GGGCCGTTGG TATCTTAAGC CGTCTGGCGA TGATGACGGG CTTGGCGCTT
GGGATATTCC CCTTGCTGGT TCTGGCCCAT CCGGTGTTAC CGGTTAATGG CCATGTTGTC
ATCGGGCAAG GGATGTTGGA TCAGCAAAGC AGTACGCTTA CCGTGACACA GCAAACGGAT
AAGTTAGCGA TTAATTGGGA CAGTTTTGAT ATTGCGCACG GACACAGTGT CATTTATGCC
CAGCCGGGTA GCCAGAGCAT TGCATTGAAT CAGGTGCAGG GGCAGAGCGC ATCGCAAATT
TATGGCCGCT TACAGGCAAA TGGTCAGGTC TTCTTGCTTA ACCCGCGCGG GATACTGTTT
GGTAAAGAGG CGCAGGTTAA TGTCGGTGGG TTGGTGGCGA GCACGAAATA TATGTCAAAT
CCAGAGTTTC TGTCTGGTGA CTACCGCCTG ATCGGGGGGG AGAGTGAAGG CAATATTATT
AATCAGGCGA ATTTACGCTC GGCCCCAGGG GGATATATCG CACTGGTGGG TAACCGGATT
GATAACCAGC GTTCAGGGTC TATCACCACC CCACAAGGGA ACACTGTGCT GGCAGTCGGT
CACAGCGTGA CCTTGAATCT GGACCATGGG AATTTATTAG GGGTACAAAT TCAGGGGGAA
ACCGTTGCTG CACTGATTCA AAATGGTGGG TTAATCCAGG CTGATGGCGG AGTGATTCAA
CTGACGGCTA AGGGTAAAGA TATGCTGATG GATACGGTGA TTGATAATAC CGGTATCCTG
CAAGCTAAAG GGTTGTCAGC GAAAAATGGT GCTATTTATC TTGATGGCGG TGGTGAGGGG
GTTGTCAGCC AGATGGGGAC CATCGATGTT AACAATCAGC AGGGGCGTGG AGGACGTGCG
GTTGTTGAAG GGAAACGTAT TTATCTGAAT AAGAACAGTA ATATTAAAGC GAAGGGCACT
GCAGGCGGTG GCACTGTTTT AGTGGGGGGG GGCTGGCAAG GCAAAGATAA TCAGATCAGA
AATGCCACGG CTGTGGTGAT GGATAAAGGC AGTGATATTG ATGTTTCGGC ATCTCGCAAC
GGGCCGGGAG GAAGTGCGGT TTTATGGTCT GAGGATTACA CCGGTTTTCA CGGTAATATC
CGAGCCAGAG GCGGGCCTCA ATCAGGCGAT GGCGGTCAGG TTGAAACATC CAGCCAACGC
AATTTACAAG CTTTTGGGCA AGTGGATGCC AGTGCCGTTC GTGGATCCGC AGGCTATTGG
TTATTGGACC CTGCGGAGGT AACAATTGTT AGCAGTGGTG CTGAGAGTGG TGTAATGACT
AAAGTGGGTA ATATACCCGC AGAGTTTTTT TCTAGCGCCC ATATTTTTAT TCCAACGGCC
AATATTACTC AGATCCTCAA TAGTAGTATT AATACCCAGC TTAATAGTGG CACTAATGTT
ACGATAACCA CCAGCAACAG TAGTTTAACG GGGTGCCAAT GGTGCAATAT AACTGTACAA
GCCGATATCA CTAAAACGGC GGGAGCCGAT GCGACGCTGA CATTACAGGC TGACGGTAAT
ATTGTAGTTA ATAATAATAT TACCGCTGAT GCTGGAAAAT TAAATTTATT AGCAGGAAAT
ACCACTGCGG ATTCTGCCAT CACGCTGAAT AATAGCAAGG TTTTATTAAA TGGCGGTGAT
TTTTTAGCTA AACATGCCAA TGATAATAAT ACGGCACGTA TTGGCTTACT GGGCGGGCGA
TATGATGTTG GCAATTTCAC CTTGGATGGG AATACCGCAT TAGCCTCACA AGTTGGGGTG
AATATCAGTA ATGCGGCTAA TATTAGCGTC GCGGGCGAAA CCGTTATCTC CGGTGTGAGC
AGTAACAGCC GTGGGCAAGG GTGGCGTGGT ATTGATATAT CAAATAATTC GATCTTAACG
GGCGTGGGGA ATATGACTTT CTCGATAGGC TCTAACTCCA ATGTTTCATG GATGGGGTCA
TTCACTAATG CAACAATTAC CAGTGATAAG AATATAATAT TCCAAGGGAC GGGGAGTTCG
TCAGGTGGAG TGGACTTTGT TAATAGCCGT ATTTTGTCAA AATCTGGCCG TGTTTTATTT
GATATAAATG GCAATATTGT TGTTAAGAAT GTTTATGGGC TTCGGGTCAA TAATTCACAG
CTCAGTGCTA AGGATGTTAA ATTTGCAGTC AATGTCACTG GAGTTGATGG TTTTTTACTA
AGAGATAGTC ATGTTACCGC AACTTCCGGT GATATTAATG CCAATGCTAA TACCATCAAT
AAAGGTATTT GGATCTCAGG TAAAACCAAT TTAAACGCCA GTGGTAATGT TAATCTGCAT
GGTGTGACGA CTAATTCGGC CTATGCGGGT GCTGATGCAA TAAAGATCAG CGGTAATTCC
AGTAGTAACA ATGTCAATAT TACCGCTGGT GGTCATATCT CTCTGATCGC GGTTAATGGA
GGGAAAGAGA TTGGAAGCAC TGTTTCTGTA GATTACGCCA ATATAATAGC TAAGAATGGA
GACTTTAATT TAAATATTAC TGGGATGAAA GGGAGTCCTT TTAATAACGC TACGATAACT
GCCAACAATA TTTCAATGAA TGGCAATATT ACCGCTAATG ATGCGGTGTT GATGACTAAT
ACATTCCTCA CGGCTAAAGG CGATATCAAA ACTGATTTAA CCTCTCCTAC TAAAGGTTTA
TGGTTTAGGG GAAATGGTGG GATGACCGCG GCTAATAATA TACTCTTGGT TGCTAACAGC
ACATCGAGTG GAGAAACAGT GAAAATCAAT GCGTCTTCCT CGAACAAAAT GAATATCACT
GCAGGAAAAG ATATATCTAT AATAGCCGGT AATAGTAAAA CAGCTACGGG ACCTAACATT
AATATTGAAA ATGTCAATAT AGAAACCAAT AATGGAAACT TTACGACTAA CGGCATAACA
AGTACATGGC TGTCGGGAGT GAATGTTAGC GCGAATGGTG TTGATATAAC CTCTAATTCT
ACTGGCACCG GTGGCATAGT ATTGGATAAT ACTAATATCC TGACAACAGT AGGTGATATT
AATACAATAG TAACCAATTC TTCCGGCAAA GGCATTTGGA TTAAATCTAA CTCAACATTG
AATTCTAATA AAGATATCAC CTTGGTTGGA GTATCCGCCG GACAGAATGA AGGGGTCATT
ATTCAAGGTT CTTCAGATGC TTCACGTAAC AATATCTCTG CTCAAGGGAA TATCACCTTA
ATAGGTAAAA TGGGCAATGG CTCTGGTCAG CGTTCATTAA TCAATTTGGG TAATGTTAGT
CTAACATCAA GCGGAAGAAA TATTGATATT AATGGTTCGT CAGCCGGTAC CGGGGATGTT
TATTTTACCA ATGTAGAGCT TAATGCTACC GCAGGTAATG TTTCTATTTA TGCTGAAACG
AAAACCGCTT TATCGACATC ATTAAATGCC GTATTAAGCT TGGGGGGTAA TAACAGTATC
AAAGCTCAAA ATGGATGGCT TATTGGTAAA GCATTTAATA CGACACAAGG GGCGGGTATT
GGTTTTAGAG CCAATAGTAG CTTATCTGTT GACGGCAATA TCATTTTGAA AGGCGAGACC
GAAGGGGTTG GGGCCACACG CAAAGGGATT GATTTCTATG GCGCGAATAC ACTGAATATT
ATTAAAGGTA GCCAATTATC TCTCCTCGGT GAAAATAAAG GGGCTCAAGA TACCGCAGGT
GGTAATGGCA TAAGCTATAC CAGCCCAGCT AAATTAACGG TTAATAATAA TGGTTCTTTA
AAAATGGAGG GGCGTTCAAC CAACGGTACG GGAATTAACT TCCCAAGCAG CAATAATACG
CTGGTATTCA ATGGTGATGG TGACACGCTG ATTAAAGGCA GCAGTGTCGC GGGTACGGGG
GCCGCTATTT CCGGTGTTGT TAATAATAGT ACCGGCCCCA TGACGATTGA AGGAATCAGT
ACCGATGGTG CCGGTGTTCA CCTTTTCAGT GCAGAACATC GTATTGATCG CATTAATGTC
ACAGGGAGTT CAACTCACGC CGAAGGTTTG CGGATCAGTG GTAATGCAGC GATTGTCGAT
ACCACATTGA CCGGAAAGTC GATCAATGGC AGTGGTGTGA AGATTGATTC ATTGCCGGGC
TCCAGTGTTG TTACCCGTTC CGTCTTGGAT AATGCCACGC TCAATGGCAG CAGTAGCAGT
GGGAAAGGGG TGGAAATTAC CAGTGATATC AATGGTATTC ATCACAGTTC GATTAACGGA
ACGGCTACTG GCACGGGCTA CGGCATTAAT ATTGGCGAAA ATTTAAACGT TACCGGGACC
AGTGAAGCTG ACTTGTTGAT TCTACAAGGT GTGGCGACAA CAGGTACTGG CACCGGAATA
AAACTCAATG GTAATAATGA TTTAAGTAAT ACCAGTTTAA ATAGCTCTGC GGTTGATGGT
ATCGCTTTGG ATATCACGGG CCCGCTAGCT AACCAAGGGA ATGTGATCCT AAACGGCACG
GCTTCTGGTT CGGGGATTGG TGCGCAGGTC AATGGTTCGC TAAGTGATAG TGTGGTTAAC
GGTACGTCGA CGAATGGTAT TGGTGTGCAA ATTAATGGAT CGCTTGAAAA CAGCCGCATC
AACGGCATTT CGGCCAATGG CAGCGGGGTT AAAGTCGATG GCGATAGCAC GCTGGATAAC
GCCACGCTCA ATGGCAACAG CAGCGAAGGC AAGGGCGTGG ATCTGGCGGC CAATCTGTCC
GGTAACCATG GCAGTGCGGT GCATGGCGAC ACGGTCAATG GCACCGGCAT CGACGTGGGT
AAAGACGTCA CTCTGAGTGG CGGTGGTACG GATGAACCGT TAACGGTCAG TGGTAATGCC
AGCGGTGAGA AAGGCACCGG CGTGCAACTG GGCGGCAATA ATACCCTCGA TAACACCACG
CTGAGCGGTA ATGCCACTGA CGGCACCGGC GTGGATATCA CCGGCCCGCT GACCAATAGC
GGCAATACCA CCCTCGGCGG TAAAGCTGAA AAAGGCGATG GCGTGCAACT CGATGGCGCG
ATTACCGGCG GCACGGTCAA CGGCACTTCC GACAGCGGCG CAGGGATTAA AGTGGATGGC
GAGACCACGC TGGATAACGC CACGCTTAAT GGCAACAGCA GCGAAGGCAA GGGCGTGGAT
CTGGCGGCCA ATCTGTCCGG TAACCATGGC AGTGCGGTGC ATGGCGACAC GGTCAATGGC
ACCGGCATCG ACGTGGGTAA AGGCGTCACC CTGAGTGGCG GTGGTACGGA TGAACCGTTA
ACGGTCAGCG GTAATGCCAG CGGTGAGAAA GGCACCGGCG TGCAACTGGG CGGCAATAAT
ACCCTCGATA ACACCACGCT GAGCGGCAAC GCCACCGATG GCCATGGGGT AGAGATTAAC
AGCCGATTAA TCAATAACGG CAATACTACG ATTAATGGCA AAACGTCTGA TGATGGTCAC
GGCGTACATA TTAATGGGGC CATCAGTGGC GGAGAAATCA ATGGTCATTC AGACAATAGC
CACGGTGTTT TCCTCGATGA AAGTGCGTTA CTTAATGACA TCGTTATCGG AGGAGGGACC
GGCTCATATA AACTGCCGGT GTTTATAGCA TTGCCTGAAA CCATCGGTGA GCACGTGACT
CTTAATGGTA AACCGATTGA TAAAACCCAG CCAGAAGGCA GTAAGGCACG TGAAGGTGAT
AACCTGACAA GGGGTAAATA TACACCTTTG CCACCGGCTA CTGACCCTGA ATTGCCCCCA
GCATCAACCG ATGAGGAGAA AAATACAAAA CAGACCTCGA CGCTAACCCC ATCTCAGAAA
AGAGAGGATC CAGACATGTT GATAATGGCG CGAAACCATA TCTTGAGTAC CCTTGAAGGG
CGTGATTTAT CTTCATCTGT TGTCACTGAA TCGGAGCAAA GTGCGGCGGG CGTTACCGGA
ATTATGGTTT GTCTCCCTCT GAGTGAGGCC TCTGAACATG AACCTTGCGA TACGTATATT
TTAGACAAGG GACAACCCCA TCTCCCCATG ATGGTCAAGA AGTAA
 
Protein sequence
MNSKLYKLIF CRRLGCLIAV GEFTRSYGRA FSSKDGQTGN NQRRAVGILS RLAMMTGLAL 
GIFPLLVLAH PVLPVNGHVV IGQGMLDQQS STLTVTQQTD KLAINWDSFD IAHGHSVIYA
QPGSQSIALN QVQGQSASQI YGRLQANGQV FLLNPRGILF GKEAQVNVGG LVASTKYMSN
PEFLSGDYRL IGGESEGNII NQANLRSAPG GYIALVGNRI DNQRSGSITT PQGNTVLAVG
HSVTLNLDHG NLLGVQIQGE TVAALIQNGG LIQADGGVIQ LTAKGKDMLM DTVIDNTGIL
QAKGLSAKNG AIYLDGGGEG VVSQMGTIDV NNQQGRGGRA VVEGKRIYLN KNSNIKAKGT
AGGGTVLVGG GWQGKDNQIR NATAVVMDKG SDIDVSASRN GPGGSAVLWS EDYTGFHGNI
RARGGPQSGD GGQVETSSQR NLQAFGQVDA SAVRGSAGYW LLDPAEVTIV SSGAESGVMT
KVGNIPAEFF SSAHIFIPTA NITQILNSSI NTQLNSGTNV TITTSNSSLT GCQWCNITVQ
ADITKTAGAD ATLTLQADGN IVVNNNITAD AGKLNLLAGN TTADSAITLN NSKVLLNGGD
FLAKHANDNN TARIGLLGGR YDVGNFTLDG NTALASQVGV NISNAANISV AGETVISGVS
SNSRGQGWRG IDISNNSILT GVGNMTFSIG SNSNVSWMGS FTNATITSDK NIIFQGTGSS
SGGVDFVNSR ILSKSGRVLF DINGNIVVKN VYGLRVNNSQ LSAKDVKFAV NVTGVDGFLL
RDSHVTATSG DINANANTIN KGIWISGKTN LNASGNVNLH GVTTNSAYAG ADAIKISGNS
SSNNVNITAG GHISLIAVNG GKEIGSTVSV DYANIIAKNG DFNLNITGMK GSPFNNATIT
ANNISMNGNI TANDAVLMTN TFLTAKGDIK TDLTSPTKGL WFRGNGGMTA ANNILLVANS
TSSGETVKIN ASSSNKMNIT AGKDISIIAG NSKTATGPNI NIENVNIETN NGNFTTNGIT
STWLSGVNVS ANGVDITSNS TGTGGIVLDN TNILTTVGDI NTIVTNSSGK GIWIKSNSTL
NSNKDITLVG VSAGQNEGVI IQGSSDASRN NISAQGNITL IGKMGNGSGQ RSLINLGNVS
LTSSGRNIDI NGSSAGTGDV YFTNVELNAT AGNVSIYAET KTALSTSLNA VLSLGGNNSI
KAQNGWLIGK AFNTTQGAGI GFRANSSLSV DGNIILKGET EGVGATRKGI DFYGANTLNI
IKGSQLSLLG ENKGAQDTAG GNGISYTSPA KLTVNNNGSL KMEGRSTNGT GINFPSSNNT
LVFNGDGDTL IKGSSVAGTG AAISGVVNNS TGPMTIEGIS TDGAGVHLFS AEHRIDRINV
TGSSTHAEGL RISGNAAIVD TTLTGKSING SGVKIDSLPG SSVVTRSVLD NATLNGSSSS
GKGVEITSDI NGIHHSSING TATGTGYGIN IGENLNVTGT SEADLLILQG VATTGTGTGI
KLNGNNDLSN TSLNSSAVDG IALDITGPLA NQGNVILNGT ASGSGIGAQV NGSLSDSVVN
GTSTNGIGVQ INGSLENSRI NGISANGSGV KVDGDSTLDN ATLNGNSSEG KGVDLAANLS
GNHGSAVHGD TVNGTGIDVG KDVTLSGGGT DEPLTVSGNA SGEKGTGVQL GGNNTLDNTT
LSGNATDGTG VDITGPLTNS GNTTLGGKAE KGDGVQLDGA ITGGTVNGTS DSGAGIKVDG
ETTLDNATLN GNSSEGKGVD LAANLSGNHG SAVHGDTVNG TGIDVGKGVT LSGGGTDEPL
TVSGNASGEK GTGVQLGGNN TLDNTTLSGN ATDGHGVEIN SRLINNGNTT INGKTSDDGH
GVHINGAISG GEINGHSDNS HGVFLDESAL LNDIVIGGGT GSYKLPVFIA LPETIGEHVT
LNGKPIDKTQ PEGSKAREGD NLTRGKYTPL PPATDPELPP ASTDEEKNTK QTSTLTPSQK
REDPDMLIMA RNHILSTLEG RDLSSSVVTE SEQSAAGVTG IMVCLPLSEA SEHEPCDTYI
LDKGQPHLPM MVKK