| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YPK_3277 |
|---|
| Symbol | |
|---|
| ID | 6090014 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Yersinia pseudotuberculosis YPIII |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010465 |
|---|
| Strand | + |
|---|
| Start bp | 3584609 |
|---|
| End bp | 3585853 |
|---|
| Gene Length | 1245 bp |
|---|
| Protein Length | 414 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 641598354 |
|---|
| Product | exonuclease subunit SbcD |
|---|
| Protein accession | YP_001721999 |
|---|
| Protein GI | 170025494 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0420] DNA repair exonuclease |
|---|
| TIGRFAM ID | [TIGR00619] exonuclease SbcD |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.763472 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGTATTA TTCATACCTC TGACTGGCAT TTGGGGCAGT ATTTTTTCAC CAAAAGCCGT
GCTGCTGAAC ATCAGGCATT TCTGCACTGG TTGATTGAGC AGATCAAAGA ACACCAGGTT
GATGCGCTGA TTGTCGCAGG GGATATTTTT GATACCGGTG CCCCGCCCAG CTATGCCCGT
GAGCTCTATA ACCGTTTTAT TGTTGAGCTC CAGCCTACCG CCTGTCAATT AGTGGTACTG
GGTGGCAACC ATGATTCGGT AGCCACACTG AATGAATCAC GAGATTTACT TTCATACCTG
AATACCTCGG TAATCTCATG TGCCAGTCGT GATCTGAAAC AACAAGTGAT TATCCTGAAA
AATAGACAGC AGCAACCCGC AGCGGTGCTA TGCGCCATTC CGTTTTTACG GCCCCGTGAT
CTGGTGACCA GTCAAGCGGG TGAGTCTGGT GACCAGAAAC AACTGGCATT ACAAGAAGCT
ATTGCTGGCC ACTATCAAAC GTTATATCAA CGCGCCCTAG AACTGCGATC TCAGCTTGGC
TTGCCTCTGC CCATTATCGC CACCGGGCAC CTGACCACCG TGGGTGTGAC AACCACAGAC
TCAGTACGAG ACATTTATAT TGGTACACTA GATGCCTTTC CGGCTCAGGC TTTTCCACCC
GCGGATTACA TTGCCCTTGG TCATATCCAT CGCGCTCAAC AGGTCGCTAA AACTGAACAT
ATCCGCTACA GCGGCTCACC TATAGCGCTC AGTTTTGATG AACTAAGCAA AGAGAAAAGT
GTGTATTTGG TGGAGTTTGA CCAGCAAAAT CTGTCATCAG TTACCCCACT CTTCATTCCA
CAATTTCAAC CGATGCAATT GATCAAAGGT GATTTGCGCC AAATAGAGCA GCAATTAGCG
GCATTTGCTG GCCATGAAGG CTTACCCGTG TGGTTGGATA TAGAAGTGGC AACCCAAGAC
TATCTCACCG ATATTCAAAG ACGGATCCAG GCACTGGCAG CGAACTTGCC CGTTGAAGTG
GTATTACTAC GCCGTAGCAA AGAACAACGT AATAACAGCA TCCACCGACA GGAAAAAGAA
ACGCTAAACG AATTGACCGT CAGTGACGTA TTTGAACGTA GGCTGGCACT GGAGGCAGAT
TTACCCGAGC CTCGCCAGCA GCGAATGCGC CAAATGTTCA ATTACGTGGT TGATGAAATA
GCACAAGATG GCAGTAACGG TGTGGCGGAG GAGCCAGCCC AATGA
|
|---|
| Protein sequence | MRIIHTSDWH LGQYFFTKSR AAEHQAFLHW LIEQIKEHQV DALIVAGDIF DTGAPPSYAR
ELYNRFIVEL QPTACQLVVL GGNHDSVATL NESRDLLSYL NTSVISCASR DLKQQVIILK
NRQQQPAAVL CAIPFLRPRD LVTSQAGESG DQKQLALQEA IAGHYQTLYQ RALELRSQLG
LPLPIIATGH LTTVGVTTTD SVRDIYIGTL DAFPAQAFPP ADYIALGHIH RAQQVAKTEH
IRYSGSPIAL SFDELSKEKS VYLVEFDQQN LSSVTPLFIP QFQPMQLIKG DLRQIEQQLA
AFAGHEGLPV WLDIEVATQD YLTDIQRRIQ ALAANLPVEV VLLRRSKEQR NNSIHRQEKE
TLNELTVSDV FERRLALEAD LPEPRQQRMR QMFNYVVDEI AQDGSNGVAE EPAQ
|
|---|
| |